Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01525 ATGTGGATAATGGATATTCCCGAGGTTGAAGAAAATCTTTTTGCACCAAGCGATGCCAAGCAAGTACTTGGATTGTTTGAGGTGTTTATACTAAGATGTAACATATCACCTAACAAATATATTTTTTTTTTTCTTGTGAAGTTACATGGAGAAATGTGCAAGTCTCTTTCGGCAATACACTGCAAGATATTGTTATTATTCCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTGCATGTAGCCTTAGAAAAGACAAAGAATGTTCTTCGACACTGCTCAGAGTCGAGTAAACTTTACTTGGCTATAACAGCAGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAATGGGGTGAAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTGCAAATACGGTATTTGCACTTGATCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTACTGATTCTAATGATAGTAGTGAACTTGAATGCTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGAGCGGCCCTTGCAGAAAGAAGATCTCTTAGAAAACTCATAGAAAGAGCTCGAGCTGAGGATGACAAGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGAAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCTGAGATCTCTTGAGGATGGGATTACTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCTAGTAATAGGGAATCAGGGCAGATGCTTGTTTTGCCTGAAGAGTTACGATGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATTGAGAAATGGTTCAGAGATGGGCACAAGACCTGCCCAAAGACACAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTGAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTATTGGAGGTTGGCATTATCAGATACTGAATCCACAAATTCAAGATCTGCAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTATCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGGAAATGGGGGGGAATGCATCTGAGGACCTTTCTGCACAAGAGGAAGAAGATCATGAACGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGAACAATTGGAAGAGGAAGTGCAAAGTTGTTGAACAGTTGAGGCTGTTGCTGCGGGACGACGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGATGCACTTATGCAGTATCTGCAATCAGCCGTGCATGAAGGGGATGTGACGGCTCTTGAAAATGGAGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTGTCGTTGTTGGAGGAAATGATATCAAAAACTAGTTCCCATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGACGTGATTGGCACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACGCCAAGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAATATTTCTACATTGTCCTCCAACATTCCACATCTCCTTTCATCTGGCATCATTGGAAGCCTACAATCCCTTCTTGTAGGCCAGGATGATTGCAGTTTGACAGAAAAATGCCTTGCTGTTTTGATAAATTTGGCTGTCTCTCCAGCAGGAAGAGAGCAAATGATTTTGGCTCCTGCACTCATAAGTGCCTTGGCGTCCACGCTGGATACTGGTAAGCTCACAGAGCAGGAGCAAGCTGCCTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGCTGTGAGATGGTCTTGCAAGAAGGCGTTATCCCTGCGTTGGTGTCATTATCTGTAAATGGAACCTCGAGAGGAAGAGAAAAGGCTCAGAAACTTTTGACGGTCTTCCGAGAGCAGCGTCAACGGGACCATTCACCTGTTGAGACAAATGAATGTGAACCTGAAAGTAGTGATTTCTCTATGCCTCCTCCTGAAACGAAACCCTTATGTAAATCAATATCCAGAAGAAAGGTGGTAGGGAAAGCTTTTAGATTTCTCTGGAAAAGCAAGAGCTATTCTGTTTATCAGTGTTAA 2391 0.4145 MWIMDIPEVEENLFAPSDAKQVLGLFEVFILRCNISPNKYIFFFLVKLHGEMCKSLSAIHCKILLLFPSLEAARPRSKSGIQALCSLHVALEKTKNVLRHCSESSKLYLAITADSVLLKFEKAKCALEDSLNGVKDIVPQSIGCQIDEIVNELANTVFALDPSEKQVGDDLIALLQKGRKLTDSNDSSELECFHLAATTIGITSSRAALAERRSLRKLIERARAEDDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVLRSLEDGITGGHCHVFDRQLSKLSSFNFKPSNRESGQMLVLPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSANSVGSCKLKGIKVVPVEESGISEEMGGNASEDLSAQEEEDHERYLSFLKVLSEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVDALMQYLQSAVHEGDVTALENGAMALFNLAVNNNRNKEIMISAGILSLLEEMISKTSSHGCVAALYLNLSCLEEAKDVIGTSQAVQFLIQILHAKTEVQCKIDSLHALYNISTLSSNIPHLLSSGIIGSLQSLLVGQDDCSLTEKCLAVLINLAVSPAGREQMILAPALISALASTLDTGKLTEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSLSVNGTSRGREKAQKLLTVFREQRQRDHSPVETNECEPESSDFSMPPPETKPLCKSISRRKVVGKAFRFLWKSKSYSVYQC 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01525 796 Pfam U-box domain 310 379 IPR003613 GO:0004842|GO:0016567
Vimu6g01525 796 MobiDBLite consensus disorder prediction 739 764 - -
Vimu6g01525 796 SUPERFAMILY ARM repeat 458 737 IPR016024 -
Vimu6g01525 796 PANTHER U BOX DOMAIN-CONTAINING 51 735 - -
Vimu6g01525 796 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 382 IPR013083 -
Vimu6g01525 796 SUPERFAMILY RING/U-box 300 384 - -
Vimu6g01525 796 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 542 IPR000225 GO:0005515
Vimu6g01525 796 Gene3D - 432 753 IPR011989 -
Vimu6g01525 796 FunFam RING-type E3 ubiquitin transferase 308 382 - -
Vimu6g01525 796 CDD RING-Ubox_PUB 310 362 IPR045210 -
Vimu6g01525 796 SMART arm_5 654 695 IPR000225 GO:0005515
Vimu6g01525 796 SMART arm_5 570 611 IPR000225 GO:0005515
Vimu6g01525 796 SMART arm_5 612 653 IPR000225 GO:0005515
Vimu6g01525 796 SMART arm_5 697 737 IPR000225 GO:0005515
Vimu6g01525 796 SMART arm_5 485 529 IPR000225 GO:0005515
Vimu6g01525 796 SMART arm_5 531 569 IPR000225 GO:0005515
Vimu6g01525 796 SMART Ubox_2 312 375 IPR003613 GO:0004842|GO:0016567
Vimu6g01525 796 Coils Coil 205 225 - -
Vimu6g01525 796 ProSiteProfiles U-box domain profile. 308 382 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01525 Vimu-Chr6 14357482 14361109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01525 4 796 U-box Gene Family AT1G27910 62.949 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01525 - - gmx:100804344 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01525 6 14357482 14361109 Vimu6g01525 6 14357482 14361109 ECH
Vimu6g01525 6 14357482 14361109 Vimu11g01840 11 25771463 25774466 PCT