LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g01518	TTGTTCTTCTTCAATTCCTTGGAAGAAGTAGAAGAAGAAGCCGGAGCCGTCATGGTGAAGTACTCCAGAGAACCTGAAAATCCCACCAAGTCTTGCAAGGCAAGAGGCGCGGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCTTGGTTAAAGCTAAGAGATACTTGGAGGATGTGTTGGCCCACAAACAAGCCATCCCTTTCCGCCGTTTCTGCCGTGGTGTTGGGAGGACAGCTCAGGCCAAAAACAGACACTCCAATGGACAAGGACGTTGGCCCGTCAAATCAGCTAAATTCATCCTGGATTTGCTGAAAAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTAGATGCTCTTTATATTTCTCATATTCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACCGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCATGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCGGAGACACAATTGGCAACAAGCAAGAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCCTAA	597	0.4724	MFFFNSLEEVEEEAGAVMVKYSREPENPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS	198

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g01518	198	Gene3D	Ribosomal protein L22/L17	18	197	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Vimu6g01518	198	Hamap	50S ribosomal protein L22 [rplV].	17	171	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vimu6g01518	198	MobiDBLite	consensus disorder prediction	171	198	-	-
	Vimu6g01518	198	NCBIfam	50S ribosomal protein L22	21	171	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Vimu6g01518	198	FunFam	60S ribosomal protein L17	18	192	-	-
	Vimu6g01518	198	CDD	Ribosomal_L22	32	168	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Vimu6g01518	198	ProSitePatterns	Ribosomal protein L22 signature.	144	168	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Vimu6g01518	198	SUPERFAMILY	Ribosomal protein L22	18	171	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Vimu6g01518	198	Pfam	Ribosomal protein L22p/L17e	34	169	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Vimu6g01518	198	PANTHER	60S RIBOSOMAL PROTEIN L17	18	190	IPR005721	GO:0003735\|GO:0006412\|GO:0015934

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g01518	Vimu-Chr6	14322896	14324504	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g01518	18	191	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	90.805	3.72e-119	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g01518	K02880		-	gmx:100305777	348.977

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu6g01518	6	14322896	14324504	Vimu11g01855	11	26175983	26181907	PCT