Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01514 ATGATTGCTATGGCGGAGGAAGAAGAGAACGGTGTGTCGATTCAACTCGAATTCCCGAAGAGTCGGGTTAAGAAGATCATGACGCTGGACAAGGATGTGAAGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACAGAGTTGTTCCTCCAATTTCTGGCTGAAAAATCTGCCAAAGTTGCTATCGAAAAGAAACGGAAGACCGTGAATCTGGAACACGTGAGAATGGCCGTTAAGAGGCACCAGCCAATCAGGGATTTTCTCCTCGATGATCTTCCACCTCCGTCTGAGCCCGCCAAGCCCGATGGGCCCGCCAAGCCCGTGGTTCGGCCCAAACTTGATGAACCGCCGTCTGGTACTCGTCGCATCGATCAGTTTTTCCGAAAGCCGGAGCCTCAAAACCCAACCCAAGCTCAATCGCCTGAAAATCCAGCCCAAGCTCAGTTGTCTGAAATTCCTGCCCAAGCTCAAGCGCCCGAAATACCTTCTCAAGCTCAATCGCCTGAAGTTCCCTCTGAAACTCAATCGCCTGGAGTTCCTTCTGAAACTCAATCGCCTGGAGTTCCTTCTGAAACTCAATCGCCTGGAGTTCCTTCTGAATCTCAATCGCCTGAA 621 0.5137 MIAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPIRDFLLDDLPPPSEPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQLSEIPAQAQAPEIPSQAQSPEVPSETQSPGVPSETQSPGVPSETQSPGVPSESQSPE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01514 207 FunFam Nuclear factor Y, subunit C13 4 95 - -
Vimu6g01514 207 SUPERFAMILY Histone-fold 16 83 IPR009072 GO:0046982
Vimu6g01514 207 MobiDBLite consensus disorder prediction 132 207 - -
Vimu6g01514 207 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 142 - -
Vimu6g01514 207 MobiDBLite consensus disorder prediction 89 207 - -
Vimu6g01514 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 17 80 IPR003958 -
Vimu6g01514 207 Gene3D Histone, subunit A 2 95 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01514 7 131 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.200 6.42e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu6g01514 CBFD_NFYB_HMF 6.7e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01514 - - vun:114164970 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01514 6 14308499 14309155 Vimu6g01514 6 14308499 14309155 ECH