Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01498 ATGAAGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTCTCAGATCATAATGCAAGGCGTCGCAAACCACAGCCTGACTCAGTCCAAATAAATCCATCAGCGTTGTCTTCGTCGCCTTATGGTATAACAAAAACATTCCTTTCTCTTGGAAAATCCAGTGTTTTTGTCTTGCTCCTTGGTCTGGTTTTGAAGTTTATTATTTTGGGATGCATAGTAGAACATATCATGAAATGTTTCTGGGAGAATTCTGAGAATGAAACATGTGGTAAAAATATGAACAAATGGGGGGACAAAATTTGGTGA 324 0.3858 MKFHALSEFDDKKRSCRKRLSDHNARRRKPQPDSVQINPSALSSSPYGITKTFLSLGKSSVFVLLLGLVLKFIILGCIVEHIMKCFWENSENETCGKNMNKWGDKIW 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01498 107 MobiDBLite consensus disorder prediction 31 46 - -
Vimu6g01498 107 ProSiteProfiles Zinc finger SBP-type profile. 1 30 IPR004333 GO:0003677
Vimu6g01498 107 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 42 IPR044817 GO:0003677
Vimu6g01498 107 Pfam SBP domain 2 29 IPR004333 GO:0003677
Vimu6g01498 107 MobiDBLite consensus disorder prediction 20 46 - -
Vimu6g01498 107 SUPERFAMILY SBT domain 2 35 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01498 Vimu-Chr6 14204433 14204899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01498 2 32 SBP-box Gene Family AT5G43270 83.871 8.18e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu6g01498 SBP 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01498 - - gmx:100796013 94.3597