Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01497 ATGGAGTGGAATGCAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCGAGGTTACCAACAACTGATTGTAGCAACGAAGCAGATCGAGAAATCAATGTTGGGGTGTTTTATCCATCAGGTGGGAGTGCCTGTTCTGGGTCTGAACTAGTACATGCTTCTTCACCTAGGAGCTCAAAATCAGCTTCCAACAATTCACTGTCAAATGGGGATAGCAAGGCTTCGGTGTTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAACTGTGCCCAGTTGAAACTTCTCAATCAGCAGTTCCTTCTCCAGTCTCCGGTGAACCTCTGCTCACTCTGAAGCTTGGCAAACGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAAGCATCTTCCTTTGAGGTTCCAATTTCTTCAGGAAAGAAATATAAAGCCAGTAATCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTTTCATCTGCTAAAGATTACCATCGCAAACACAGAGTATGTGAATCTCATTCCAAATCCCCTAAGGTGCTTGTAGCTGGTTTGGAGCGCCGGTTTTGCCAGCAATGTAGCAGGTAA 648 0.4552 MEWNAKSLGQWDWEHLFFFNTKATENPRLPTTDCSNEADREINVGVFYPSGGSACSGSELVHASSPRSSKSASNNSLSNGDSKASVLTLEGSQDDSTGKKELCPVETSQSAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKASSFEVPISSGKKYKASNQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVLVAGLERRFCQQCSR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01497 215 ProSiteProfiles Zinc finger SBP-type profile. 166 215 IPR004333 GO:0003677
Vimu6g01497 215 MobiDBLite consensus disorder prediction 58 116 - -
Vimu6g01497 215 SUPERFAMILY SBT domain 167 215 IPR036893 GO:0003677|GO:0005634
Vimu6g01497 215 Pfam SBP domain 169 215 IPR004333 GO:0003677
Vimu6g01497 215 MobiDBLite consensus disorder prediction 58 93 - -
Vimu6g01497 215 MobiDBLite consensus disorder prediction 102 116 - -
Vimu6g01497 215 Gene3D - 165 215 IPR036893 GO:0003677|GO:0005634
Vimu6g01497 215 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 215 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01497 Vimu-Chr6 14203779 14204426 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01497 1 215 SBP-box Gene Family AT5G43270 40.870 3.10e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu6g01497 SBP 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01497 - - gmx:100781289 378.637