Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01490 ATGATCATGGTAGGTTTGGAGTACAACATCGATGATCTGTTTCAAGAAGCTAAGAAACGATGGCTCAAGCCTGTCGAAGTGCTTTACATTTTACGAAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGCGGATCCTTATTTCTGTTTAATAAAAGAGTCACGCGTTTCTTCCGCAAAGATGGTCATAACTGGCGGAAGAAAAGAGACGGAAGAACTGTGGGAGAAGCACATGAACGACTTAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAAGAGAACCGTTCTTTTCAGAGGCGGAGCTATTGGATGTTGGAGCCGAAATATGAGCATATTGTTCTGGTGCATTATAGAGAAACAAGTAAGGAGACTTTCACACCATTGTCGTCAAGTTCCTCTCTTGCTTTTAGTCTGAGTCAATGCCCGTATACTGGTCTCGGCTCAGGGACATCATCCATGTTTGGTGATTCATATGAACTTAATCACAATTTCTCTAGTCCTGTGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTACGCCGATTGGAAGAAGAGCTGAATATAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAAAGATACGTCTACTACTTTGTCTGGACCAAATGATCAAGAGCATCTTTTTGTTAGATATAATGGAAGACAAGATAACAGTGACACATACTGTCATGACTTCCCTGATGATTATCCTGATGGAAATGAAAAAACTATATACTGGACCGAGGTGCTTAAAGCATGCAAGCCCTTGCCTGTGACCAATATACCAAATCAATATGGACATGAGGCATTTGAAAATGAACGGTCATTATTTTCTCCAGGAAGGGAAATGATTGCCAACATGGAAAACAATCAGTGGCCAAACTCCAACTGTAATAATGTTGAGAACTCTGTTTTTGCACTTCCTCAAGGCGACAGTGGAGTCAAATTTCCTCTATGTGAAATAGTTTTTGACCAAACCCAAATTCAAGAACCTCTGGGTGTAGATTCAAGCTTGACTGTTGAACAGAAACAGAAATTTACAATTAGGACAGTCTCCCCAGAATACTGCTATGCCACTGAGACCACAAAGGTTGTCATCATTGGATCATTTCTCTATCATCACCCGGGTTCTACTTGGGCCTGTATGTTTGGTGATGTTGAAGTTCCTGCTAAAATTATTCAGGATGGCGTAATCAGTTGTGAAACTCCTTCCAATCTTCTTGGAAAGGTTAAGTTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGATTGAGTTTGAGTTTCGAAATAAGACTACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAGATGGTAGAAGTCCAGAAGATCTGCTATTACTTGTTCGATTTGCAGAGATGCTCCACTCTTCTTCATCTAAAAAGGATGACAGCACAGAATCTGGAAGTCGCCTTTCAACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATTGACACTCTTCTAGTTGGCAGTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATCCTATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGATTTCTGGGTTGGGTTTTGAGTGGGCCTTGAATCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACAGCCCTTCATTGGGCTGCAAAGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGAAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACACCTAACAAGCCACTTGTCATCCCTCACTTTGACAGCAAGTAAGATTTCTGAAGGATCTTCTGAGCTCGAAGCCGAGTTAACTGTCGGCAGTGTCTCTGAAGAAAATATCGTGGCCAGTGCGGATCAGGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCAACTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCACATTCTTTTAGAAAACGGAAAGCAAGAGAAGCTGCTGCAGCATGTCTAGATGGATATTGTATTAATCCAGGTTGCAACAATGATAACATGTCAGTGCTTTCTGCCATGTCAAAACTTAGTTCTCGGAGCTTGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCTATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATACTATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTGCGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGGCAAGAAGTGGATTCAAACGAAGAAGAAAGTGATGATGAAGATTTTCTCAACGTGTTCCGGAAAGAGAAAGTAAATGGAGCAATTGAGATGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGAGGATGCTCGCCACCAATACAGGCGCTTACTTTCATTGTATCGTCAAGCCAAGACTGAACGTGACAGTACAAGTGATGAAGCACCGTCATCAACTTCGGAAGAGGATCCTCTCAATATGGAAGACGATGATTGGGATCTGTTATGGCAAAAGTTATGTGCTTAG 2799 0.4291 MIMVGLEYNIDDLFQEAKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLFLFNKRVTRFFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQRRSYWMLEPKYEHIVLVHYRETSKETFTPLSSSSSLAFSLSQCPYTGLGSGTSSMFGDSYELNHNFSSPVSLEVTSEAQALRRLEEELNINEDSFNERVIYKDTSTTLSGPNDQEHLFVRYNGRQDNSDTYCHDFPDDYPDGNEKTIYWTEVLKACKPLPVTNIPNQYGHEAFENERSLFSPGREMIANMENNQWPNSNCNNVENSVFALPQGDSGVKFPLCEIVFDQTQIQEPLGVDSSLTVEQKQKFTIRTVSPEYCYATETTKVVIIGSFLYHHPGSTWACMFGDVEVPAKIIQDGVISCETPSNLLGKVKLCITSGNRVPCSEVIEFEFRNKTTSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSSSSKKDDSTESGSRLSTEQKDGDDSWSHMIDTLLVGSGKSSDTVNWLLEELLKDKLQLWLSNRSYERDEGTDCSLSKKEQGIIHMISGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLIASGASAEAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVHLTSHLSSLTLTASKISEGSSELEAELTVGSVSEENIVASADQVSLKASLDAVRNATQAAARIQDAFRAHSFRKRKAREAAAACLDGYCINPGCNNDNMSVLSAMSKLSSRSLGDYNLAALSIQKKYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKILLWAVGILNKVVLRWRRKRVGITSVRQEVDSNEEESDDEDFLNVFRKEKVNGAIEMALKRVLSMVRHEDARHQYRRLLSLYRQAKTERDSTSDEAPSSTSEEDPLNMEDDDWDLLWQKLCA 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01490 932 MobiDBLite consensus disorder prediction 896 921 - -
Vimu6g01490 932 Gene3D - 766 813 - -
Vimu6g01490 932 ProSiteProfiles IQ motif profile. 766 795 IPR000048 GO:0005515
Vimu6g01490 932 Gene3D - 535 657 IPR036770 -
Vimu6g01490 932 MobiDBLite consensus disorder prediction 478 501 - -
Vimu6g01490 932 ProSiteProfiles Ankyrin repeat region circular profile. 588 617 - -
Vimu6g01490 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 817 IPR027417 -
Vimu6g01490 932 SUPERFAMILY Ankyrin repeat 559 650 IPR036770 -
Vimu6g01490 932 SMART ANK_2a 627 656 IPR002110 GO:0005515
Vimu6g01490 932 SMART ANK_2a 588 617 IPR002110 GO:0005515
Vimu6g01490 932 Pfam CG-1 domain 16 129 IPR005559 GO:0003677
Vimu6g01490 932 ProSiteProfiles CG-1 DNA-binding domain profile. 10 136 IPR005559 GO:0003677
Vimu6g01490 932 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Vimu6g01490 932 ProSiteProfiles IQ motif profile. 789 813 IPR000048 GO:0005515
Vimu6g01490 932 FunFam Calmodulin-binding transcription activator 2 765 813 - -
Vimu6g01490 932 ProSiteProfiles IQ motif profile. 706 732 IPR000048 GO:0005515
Vimu6g01490 932 SMART CG_1_2 13 131 IPR005559 GO:0003677
Vimu6g01490 932 SMART iq_5 788 810 IPR000048 GO:0005515
Vimu6g01490 932 SMART iq_5 765 787 IPR000048 GO:0005515
Vimu6g01490 932 SMART iq_5 705 727 IPR000048 GO:0005515
Vimu6g01490 932 Pfam IQ calmodulin-binding motif 769 786 IPR000048 GO:0005515
Vimu6g01490 932 Pfam IQ calmodulin-binding motif 791 810 IPR000048 GO:0005515
Vimu6g01490 932 Pfam Ankyrin repeats (3 copies) 572 648 IPR002110 GO:0005515
Vimu6g01490 932 Coils Coil 878 898 - -
Vimu6g01490 932 FunFam Calmodulin-binding transcription activator 4 isoform A 468 653 - -
Vimu6g01490 932 SUPERFAMILY E set domains 358 442 IPR014756 -
Vimu6g01490 932 Gene3D Immunoglobulins 352 447 IPR013783 -
Vimu6g01490 932 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01490 Vimu-Chr6 14172727 14185097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01490 6 927 CAMTA Transcription Factor Family AT1G67310 46.853 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vimu6g01490 CG-1 6.3e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01490 K21596 - gmx:100791430 1342.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01490 6 14172727 14185097 Vimu11g01889 11 27417632 27423080 PCT