Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01487 ACCTTTGCAAAACGAAGAAACGGGCTTTTGAAGAAAGCTTATGAGCTATCCGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACGCTAGAGAGGTATCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCGTCAACAAAGGAAGCCTTGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAAGCACGGTATGAAGCTCTACAACGTTTTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAGCGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGAGTATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGATATGGGGTATGACCGTCATCCAGGTCAACACCAAGGCGACGCTCTCTTTCAACCATTGGATTGTGAGCCAACATTACAAATGGGATATCGACCTGATCCAGTATCAGTGATAACCGGAGGCCAGAGCATGAACAATTTCATGGGAGGATGGTTACCATGA 669 0.4484 TFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEANASTKEALELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLEEYQINQFQLNPSGEDMGYDRHPGQHQGDALFQPLDCEPTLQMGYRPDPVSVITGGQSMNNFMGGWLP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01487 222 Coils Coil 107 127 - -
Vimu6g01487 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 152 - -
Vimu6g01487 222 PRINTS MADS domain signature 4 19 IPR002100 GO:0003677|GO:0046983
Vimu6g01487 222 PRINTS MADS domain signature 19 40 IPR002100 GO:0003677|GO:0046983
Vimu6g01487 222 Pfam K-box region 72 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu6g01487 222 Gene3D - 1 79 IPR036879 GO:0003677|GO:0046983
Vimu6g01487 222 SUPERFAMILY SRF-like 1 57 IPR036879 GO:0003677|GO:0046983
Vimu6g01487 222 ProSiteProfiles MADS-box domain profile. 1 42 IPR002100 GO:0003677|GO:0046983
Vimu6g01487 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 38 IPR002100 GO:0003677|GO:0046983
Vimu6g01487 222 SMART madsneu2 1 41 IPR002100 GO:0003677|GO:0046983
Vimu6g01487 222 CDD MADS_MEF2_like 1 57 IPR033896 GO:0000977|GO:0045944
Vimu6g01487 222 ProSiteProfiles K-box domain profile. 70 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01487 Vimu-Chr6 14159496 14162847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01487 1 222 MADS-box Gene Family AT1G24260 66.520 9.93e-93 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu6g01487 K-box 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01487 - - gmx:547686 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01901 11 28211783 28219440 Vimu6g01487 6 14159496 14162847 PCT