Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01465 ATGGTTACTTTTAAAAGCTATTTGACTTACAGAAGAACAGATAACACTTTCAAAGTCTCCAGATTTCGTAGCATTTGCTTTTTCTCACTAGAAGCTAAATGCTGGCATGTATACGGTGGCTTGAGATATTATCATTCTGGATCAGAATGGGGTAAAAACCAGAAATTGAATCCAAACGAAAAGCCAAAAAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATGCAATCCCACCTTTTGATGTTGCCAATAAGCTGAGAATAGCTGCATCTTCCTTTGGGATTGTTCGTTACATGGTGGCTTATGCAAATAGCCACACTTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGAAAGAGAGGGAACTGTTTCATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGTGAGCACGGGAAAAGGATAAACCAGATTGAGTCTGCTAGAGGGAGCAGGAGGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAGTGGGGTATGGTTTGGCAGATGAGCTCAAACGGGCTGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCGCAGGCTGCAGATCGAGCATTGCAAACCCACATTGTGGATGTCATGGATCATAGGCGGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAAGGAGGCAAGGCTGCGATGTCTGAAGACGGTTGTCGTTGGGGATATTGATGATGGTGTCTTGAAGAGGACTGCCGATACTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAACAGGCTGCTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTGAAGAGGTTAGAGTGGACATATAACCCTGATGCAGATAAAAATAAATTGGATGTGGATGATATTATAGCTGAAACATCTGAAGATGATAATATTGAAGATACCTCTGATGAAGTTGACGATGTCTATAAGGATGACAGAGGCTCTTGGTGGGAATTAGATTCTGACAATGATGTCTCAGAGGGACAGTCGGGCAAATTATCCAATTTATCTGTGCATAAGTGA 1194 0.4229 MVTFKSYLTYRRTDNTFKVSRFRSICFFSLEAKCWHVYGGLRYYHSGSEWGKNQKLNPNEKPKRVGLFWDLDNKPPNAIPPFDVANKLRIAASSFGIVRYMVAYANSHTFSHVPQSVREKRKERELFHRLENKGVIKPNEPYRCRVCGRKFYTNDKLVNHFKQLHEREHGKRINQIESARGSRRVKLVAKYSMKMEKYKKAASAILTPKVGYGLADELKRAGFWVQTVLDKPQAADRALQTHIVDVMDHRRVECVVLVSDDSDFVDVIKEARLRCLKTVVVGDIDDGVLKRTADTAFSWEEILMGKAKKQAASVVKNWKDRDILKRLEWTYNPDADKNKLDVDDIIAETSEDDNIEDTSDEVDDVYKDDRGSWWELDSDNDVSEGQSGKLSNLSVHK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01465 397 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 53 384 - -
Vimu6g01465 397 Gene3D - 55 303 - -
Vimu6g01465 397 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Vimu6g01465 397 Pfam NYN domain 214 294 IPR021139 GO:0004540
Vimu6g01465 397 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Vimu6g01465 397 SMART c2h2final6 142 165 IPR013087 -
Vimu6g01465 397 MobiDBLite consensus disorder prediction 376 397 - -
Vimu6g01465 397 CDD PIN_LabA-like 152 283 - -
Vimu6g01465 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Vimu6g01465 397 MobiDBLite consensus disorder prediction 379 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01465 Vimu-Chr6 14028087 14031685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01465 59 387 C2H2 Transcription Factor Family AT4G12240 60.423 2.63e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g01465 NYN 3.1e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01465 - - gmx:100785257 656.751