Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01461 ATGGAATCTGTTGCAACGGGAAGCAAGGGATTGAATGAGTTCCAAGCTGAAATTGCAATTCTTAGTAAAGTCAGACACAGACATTTAGTTGCTCTTTTAGGATATTGTATAAATGGCAACGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGGACGCTAACACAACACCTGTTTGATTGGCGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAAAGGATAGCAATAGCTTTGGATGTAGCTCGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGTTTCATTCATAGAGACTTGAAGCCCTCGAACATATTATTGGGGGATGACATGAGAGCCAAAGTTGCAGATTTTGGTTTGGTAAAAAATGCACCAGATGGGAAATATTCTGTAGAGACAAAGTTGGCTGGAACATTTGGATATCTCGCACCTGAATATGCAGGTATATTTGGACTTTTTTTATTTATCTTCTTTCCTGATTATAACTGTCTATACGTGACTACAATTCAATATATTTTTTAA 525 0.3848 MESVATGSKGLNEFQAEIAILSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWRENGCAPLTWKQRIAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETKLAGTFGYLAPEYAGIFGLFLFIFFPDYNCLYVTTIQYIF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01461 174 Gene3D Phosphorylase Kinase; domain 1 2 49 - -
Vimu6g01461 174 Pfam Protein tyrosine and serine/threonine kinase 9 147 IPR001245 GO:0004672|GO:0006468
Vimu6g01461 174 SMART serkin_6 3 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01461 174 FunFam Os07g0541700 protein 49 139 - -
Vimu6g01461 174 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01461 174 PANTHER OSJNBA0070M12.3 PROTEIN 1 149 - -
Vimu6g01461 174 Gene3D Transferase(Phosphotransferase) domain 1 50 152 - -
Vimu6g01461 174 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Vimu6g01461 174 SUPERFAMILY Protein kinase-like (PK-like) 9 149 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01461 Vimu-Chr6 14005157 14005681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01461 6 147 Receptor kinase-like Gene Family AT5G61350 52.414 9.59e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu6g01461 PK_Tyr_Ser-Thr 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01461 K00924 - gmx:100781851 293.123