Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01460 ATGAAATTGCGTACTACCGGAAGAGTGACTACCAAAGTAGATGTGTACGCATTTGGAGTAGTTTTGATGGAACTGATCACAGGTAGAAGGGCATTGGACGATACTGTGCCTGATGAAAGGTCTCACCTGGTTTCCTGGTTCCGTAGGGTGCTGATTAACAAAGAGAACATCCCCAAGGCTATTGATCAAACTCTCGATCCTGATGAGGAAACCATGGAAAGCATATATAAAGTGGCTGAACTGGCAGGTCATTGCACTGCTCGTGAACCGTATCAAAGACCAGATATGGGTCATGCAGTGAATGTCTTGGTTCCTCTCGTAGAGCAATGGAAGCCTACCAGCAACGACGAAGAAGAAGGTTATGGCATTGACATTCACATGAGCCTTCCTCAAGCTCTGCAAAGATGGCAAGCTAACGAAGGCACTTCCACAATGTTTGACATGTCCATCTCACAAACTCAATCAAGCATTCCTGCAAAACCTTCAGGATTTGCTGACTCTTTTGATTCGATGGATTGCCGATGA 525 0.4533 MKLRTTGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIDQTLDPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSNDEEEGYGIDIHMSLPQALQRWQANEGTSTMFDMSISQTQSSIPAKPSGFADSFDSMDCR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01460 174 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01460 174 SUPERFAMILY Protein kinase-like (PK-like) 6 120 IPR011009 -
Vimu6g01460 174 Gene3D Transferase(Phosphotransferase) domain 1 2 132 - -
Vimu6g01460 174 PANTHER OSJNBA0070M12.3 PROTEIN 5 174 - -
Vimu6g01460 174 MobiDBLite consensus disorder prediction 153 174 - -
Vimu6g01460 174 Pfam Protein tyrosine and serine/threonine kinase 7 101 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01460 Vimu-Chr6 14004157 14004949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01460 6 103 Receptor kinase-like Gene Family AT5G56890 44.898 8.17e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu6g01460 PK_Tyr_Ser-Thr 2.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01460 K00924 - gmx:100781851 336.65