Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01459 ATGTTGTTGGCAGCCACTGGAAGAGTGACGAGAAAAGTGGATGTGTACGCATTCGGAGTAGTTTTGATGGAACTAATTAGCGGTAAAAAGGCATTGGACAGTAGTTTGCCAGAGGAAATGCCTCACTTGGTTTCATGGTTCTGTAGGATTGTAGATAACATGGAAAACATCTCACTGGTAATTGATGAAAATCTAAACCTTGACGATGAAAGCATGGAGAGCATATGTAAAGTGGCTGAGCTGGCAACTCATTGCATCGCTCCTAAACCCCATAAAAGGCCTGATATGTGGCATGCAGTGAATGTCTTGGTTCCTCTGGTGGAGCAATGGAACCCTGCTTGCACTCATGAACAAGAAGAAGAACAAGGTTGTGACGTTATCTATGAAGGACATTATGATATGTCTATTTCAGAAATTCTCTCTGGTCGTTGA 432 0.4259 MLLAATGRVTRKVDVYAFGVVLMELISGKKALDSSLPEEMPHLVSWFCRIVDNMENISLVIDENLNLDDESMESICKVAELATHCIAPKPHKRPDMWHAVNVLVPLVEQWNPACTHEQEEEQGCDVIYEGHYDMSISEILSGR 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01459 143 ProSiteProfiles Protein kinase domain profile. 1 107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01459 143 Pfam Protein tyrosine and serine/threonine kinase 6 101 IPR001245 GO:0004672|GO:0006468
Vimu6g01459 143 Gene3D Transferase(Phosphotransferase) domain 1 2 131 - -
Vimu6g01459 143 PANTHER OSJNBA0070M12.3 PROTEIN 4 140 - -
Vimu6g01459 143 SUPERFAMILY Protein kinase-like (PK-like) 6 116 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01459 Vimu-Chr6 13998200 13998631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01459 4 103 Receptor kinase-like Gene Family AT5G56890 40.000 4.62e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu6g01459 PK_Tyr_Ser-Thr 4.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01459 K00924 - mnt:21409512 167.548