Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01458 ATGAAGAAGAGACACACCACAAGGATGCGGTGGTGTTTTGATCAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAGGTGACCTTTGCAAAACGAAGAAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACGCTTGAGAGGTATCAGAAATGTAACTATGGAGCGCCCGAGGCCATTCCAATGCGTCAACAAAGGAAGCCTTGGTATTGGTGCAAGTTGGATAGATTGGTACAACCCAATCCCAAACTTGTGCTTGCGGAAGCAAATGGAGGTCGCCAAAACAAAGCTCGAACCAGGAAACCAGGTGAGACCTTTCATCAGGAACAGTATCGTCCAAATGCCCTTCTACCTGTGAGTTCCATCAAAACTACTCAAATGCGTACAAACTTTGGTAGTCACTCTTCCAAATTACTCACAAGTAAAGGAATAGTAAATATGGAGGTGGGCAGAGATCTTCTTCCCAGCGGAGGTGTAGTAGCCGTGGGTGAGGTGGCCGCCGGAGGGGAGATCCAAACCGATGCGGTCGTGGGGCTGGAGCACGGCAGTGTAGGCGGCGAAGTTGGCCGGAGAACCAGAATAGGGGCACAGGTTCTCAATCTGATCGATGAACTCGTTGCCACCGCTACCGTAGTAGCGGTCGCCGGGCATACCCTCGGAGTACTTGTTGGAAGTGAAGTTCTCCGACGCGACGTTATCTTATGCTTCCACGACACTGGCGACGATTCTCCTTCTCAATTCCTTATTTATCTTATGCTCTCTGCCTATAATCTTGTGATAATTCTTGCAAGGGAATCAGGTTTGAAGCTAGAGCTTTGTGATATTCCCGTTGAAAATCTCGTGCCAGAACCATTAAGAGGAAGTGCATCAGCTCAAGAGTTCATGCAGCAGTTGCCAAAATTTGATGAGGAATTAGCAGAGAAATTAAAAGATGCAGAGAGTGGTGGAGAAGTGAGTAACTAG 1050 0.4743 MKKRHTTRMRWCFDQLKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEAIPMRQQRKPWYWCKLDRLVQPNPKLVLAEANGGRQNKARTRKPGETFHQEQYRPNALLPVSSIKTTQMRTNFGSHSSKLLTSKGIVNMEVGRDLLPSGGVVAVGEVAAGGEIQTDAVVGLEHGSVGGEVGRRTRIGAQVLNLIDELVATATVVAVAGHTLGVLVGSEVLRRDVILCFHDTGDDSPSQFLIYLMLSAYNLVIILARESGLKLELCDIPVENLVPEPLRGSASAQEFMQQLPKFDEELAEKLKDAESGGEVSN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01458 349 FunFam MADS-box transcription factor 1 21 93 - -
Vimu6g01458 349 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vimu6g01458 349 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vimu6g01458 349 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vimu6g01458 349 SMART madsneu2 15 68 IPR002100 GO:0003677|GO:0046983
Vimu6g01458 349 ProSiteProfiles MADS-box domain profile. 15 69 IPR002100 GO:0003677|GO:0046983
Vimu6g01458 349 CDD MADS_MEF2_like 15 84 IPR033896 GO:0000977|GO:0045944
Vimu6g01458 349 Gene3D Dihydrodipicolinate Reductase; domain 2 282 349 - -
Vimu6g01458 349 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 112 - -
Vimu6g01458 349 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vimu6g01458 349 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Vimu6g01458 349 SUPERFAMILY SRF-like 15 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01458 Vimu-Chr6 13990783 13997097 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01458 15 93 MADS-box Gene Family AT1G24260 87.500 6.67e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu6g01458 SRF-TF 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01458 - - gmx:100805078 143.665