Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01448 ATGGAGGGAATAGGGTCAGGATCAGGTTCGTCAGGTCCGGCAGCTCCGGCAGGTCCAGCACCGTTCCTACTGAAGACATACGAGATGGTGGATGATTCATCGACGGAGGAAATAGTATCGTGGAGTTCCAACAACAACACCTTCATCGTTTGGAACCCTGCTGAATTTTCTCGCCTTCTTCTTCCCACTTTTTTCAAACACAACAACTTCTCCAGCTTCATCCGTCAGCTTAACACCTATGGATTTAGAAAAGTACACCCTGAGCGATGGGAGTTTGCTAATGAAGATTTTGTGAAAGATCAAAAGCATCTTCTAAAGAATATTCACCGCAGGAAACCTATCCACAGTCACTCACTCACACAACCCCTCGTGGATTCGGAAAGGTCCGCATTTGAGGAACAGATAGACAAACTTTCCCGCGACAAGGCCACCATTCAATCCAATATTTTCCGCTTCAAACAACACCACTCCGCTGCCAAGACTTATCTTCAAGATCTGTGTCTGCGATTGGATGGCATGGAGGAGAGGCAGCAAAATTTGCTCACCTTCTTTCAAAACGCTCTTCACAATCCTACTCTTCTTCAACAGATCACTCGCAAAATCGAGTCCATGGATTTGCTCGCTTATAACAAGAAAAGGCGATTACCTCCTCGGCTTGATGACCGTGACCACGTTGCTGGAAACACCTTTGTTGAATGTTTTGGAACGGAATTTGGAAATGTTTCTCATCATGAATTCTCCGATAAACTCACACTGGAACTGTCACCTGCTGTTTCAGAAATGAACTTGGTAGTGTCATGTAGTACACAGAGTTCAAATGAAGAAGGAGAAAGCCCACATAATATGATGCTACCTGAGATAGCAGAGATTGCACAGACCGGAGAGTCTCTTAACTTTGAGATGCATTCCTGTTTATCACGAACCGCCACAGCTACCGAGAGCCCCAAATTGGACTCAAATAATGAAGATGGTGACAGTTATATATCCTGTCTTTTGAATCTATCTCTGGCATCTTCTCCACTACAAGCCAAGAGAAACACATTCCCAGATAGATCCCCATCTCTAATAGACTGTCCAGAATTTGGCAAATTGGATGGATCAAAATTTTGTGCCGATGATATTAAAGAATATGACGCTGGAGCCTCTTCAAGCAGAAGTCTAAACGAGGTCAGTAATTTAGCCGAGGCTACCCCAACTGCTCCAGTTAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCTGACACCGAAGGCTCAATGTCCACCCACAAAGTAAATGCTTATGTTGCTGATCAAGATGAAGGGCAATCCGTTCATGGAATCTCTGGAAATGTTATGGAAATGGATCAGCTCACACTCTGA 1380 0.4428 MEGIGSGSGSSGPAAPAGPAPFLLKTYEMVDDSSTEEIVSWSSNNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSLTQPLVDSERSAFEEQIDKLSRDKATIQSNIFRFKQHHSAAKTYLQDLCLRLDGMEERQQNLLTFFQNALHNPTLLQQITRKIESMDLLAYNKKRRLPPRLDDRDHVAGNTFVECFGTEFGNVSHHEFSDKLTLELSPAVSEMNLVVSCSTQSSNEEGESPHNMMLPEIAEIAQTGESLNFEMHSCLSRTATATESPKLDSNNEDGDSYISCLLNLSLASSPLQAKRNTFPDRSPSLIDCPEFGKLDGSKFCADDIKEYDAGASSSRSLNEVSNLAEATPTAPVRVNDVFWEQFLTERPGCSDTEGSMSTHKVNAYVADQDEGQSVHGISGNVMEMDQLTL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01448 459 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 269 IPR027725 -
Vimu6g01448 459 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g01448 459 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g01448 459 FunFam Heat shock transcription factor 1 15 112 - -
Vimu6g01448 459 Coils Coil 128 148 - -
Vimu6g01448 459 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g01448 459 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g01448 459 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g01448 459 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Vimu6g01448 459 Gene3D - 16 112 IPR036388 -
Vimu6g01448 459 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01448 Vimu-Chr6 13929913 13931705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01448 22 459 HSF AT4G13980 47.548 8.79e-128 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu6g01448 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01448 K09419 - gmx:100816484 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01448 6 13929913 13931705 Vimu6g01448 6 13929913 13931705 ECH