Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01437 ATGGCGTTTTCTACTAAGGTTGGAAATGTCTTGAGGCAGGGTGGTGCTCGCAGCACACAAGCATCCATGCTTAATTATATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCGTACGGAGTTGATGACCAGTCTCTTAAGGACGCATTTGCTAGTTTTGGAGACGTGGTTGAGGGTTTCATTATAACATGCATAGTCCTTATTAGTATCCGGTATAGCACAATGGCATTGCTGAAGTCCTCTCCAATCTGCTATCCTGACTCCATTGGCAGCAACAGAGTTTCAGCCTTCTGCCATTTTTGCTATCTTTTATTGACAATTGATGCACCATTAGATTTTTATTGGCAGCTGGAGTATGTTGCAGAATTCCATTGTGTCTGGGCATATCACCTATTTCTTGCCAGCACTAAAACAATGTCAGCCTTATCATATTTTTGGTTCTGGCTTACCTATACTTGCTGGTTCTGTTTCACAGCAAGGGTTATAACTGATAGAGACACCGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAGTGATGAGTCTGCAAGTACAGCACTGTCTGCAATGGACGGGCAGGATCTAAATGGGCGAAACATTAGGGTATCTTATGCAACTGATAGATCTTCTGGACCACGACCTGGTGGTGGTGGTGGTTATGGTGGTGGTGGTGGTTATGCACCTCGCAATGGTGGTGGCGGTGGTTGGTGA 723 0.4495 MAFSTKVGNVLRQGGARSTQASMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFASFGDVVEGFIITCIVLISIRYSTMALLKSSPICYPDSIGSNRVSAFCHFCYLLLTIDAPLDFYWQLEYVAEFHCVWAYHLFLASTKTMSALSYFWFWLTYTCWFCFTARVITDRDTGRSRGFGFVNFSSDESASTALSAMDGQDLNGRNIRVSYATDRSSGPRPGGGGGYGGGGGYAPRNGGGGGW 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01437 240 SUPERFAMILY RNA-binding domain, RBD 162 239 IPR035979 GO:0003676
Vimu6g01437 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 211 IPR000504 GO:0003723
Vimu6g01437 240 Gene3D - 29 103 IPR012677 -
Vimu6g01437 240 Gene3D - 158 240 IPR012677 -
Vimu6g01437 240 MobiDBLite consensus disorder prediction 209 240 - -
Vimu6g01437 240 SMART rrm1_1 34 207 IPR000504 GO:0003723
Vimu6g01437 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 205 IPR000504 GO:0003723
Vimu6g01437 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 62 IPR000504 GO:0003723
Vimu6g01437 240 SUPERFAMILY RNA-binding domain, RBD 31 65 IPR035979 GO:0003676
Vimu6g01437 240 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 162 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01437 Vimu-Chr6 13886377 13887518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01437 159 209 Eukaryotic Initiation Factors Gene Family AT1G49760 43.137 6.96e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01437 - - gmx:100527220 109.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01437 6 13886377 13887518 Vimu6g01437 6 13886377 13887518 ECH