Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01426 ATGCTAATATCGGTGACTGGAAGACAACTAAGAATAGAATGGAATAGTAAGTTGAGATTTACAGCAGCCTCAGCCGCAGCAGCAGCCGCAAAGCAGCGTATCGCATCTCATAAGGCTGAGGGCGTGAATCGTGATCCTTTGGAAGGAAGCACACTACTCAGGGCAAGCATGCCAACATCGTGGGCTGATTTGGCTGCGAATTCCGCCTCTGAAAATGCGGGAACATCCAACTCCACAGCTCCGACGCGGCCTGTTTATGTGCCTCCGCATCTGAGGAACCGTGCAGCATCAGCATCAGCATCAACGGAATCCCCCCCTGCTCCGCCCAATGTGAGTTCTAATAATAATGTCGGATCACGGTGGGGTGCGCCCAGAAACGGTTGGGGGAACAGAAGCGGTGGTTGGGATCGGCGGGAAGTGAACCCTTTCGGAGATCAGGAGGATGCAGCTGAAGAGGGAGCACCAGCTTCTGGCGAGGAGCAGGGAAACATGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGCGGTGAAAACGTTCCCCCACCTGTGAATACTTTTGCAGAGATTGACTTGGGCGATGCTCTTAATCAGAACATTAGACGCTGCAAATATGTTAAACCAACGCCGGTCCAGCGGCATGCCATACCCATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGGCCCCCCAGCGGCCCCCTCGCGGTGCCCGTACAGTCTATCCACTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGATGAGGCAGATAGGATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAGAGAGATACAGAGACTGGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCCGTTGGGAGAGTGGGCTCAAGTACCGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGCAAATGGGGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCATTGGTTGTGTCGTAATGGTTTCCCAGCAACTACTATTCACGGTGACAGGTCACAACAGGGACTTGCATTAGACATTTTAAAAGATGGTTGTGAGTTAATGTCTTGGAAAGTTGGGGGAGGACATCTGACTTCCCTAGTGGGGACTGTATTTCTATCGTGGGCAATGGTGATTAGTGGGGCTCAAAATGACTATTCTGCACACTTGTCCCTGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGCGGGCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCACTAGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCGAATCAAGAAGTACCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCTATTGGTGGTGGACGGAATCGTCGAACAGGAGGAAGCCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTACAGGAAACAACAGTGGTGGATATGGTAATTCTAGTGGTTATGGTGGAGGATATGGTCCTGGGGTAACTAGTGCTTGGGACTGA 2103 0.4883 MLISVTGRQLRIEWNSKLRFTAASAAAAAAKQRIASHKAEGVNRDPLEGSTLLRASMPTSWADLAANSASENAGTSNSTAPTRPVYVPPHLRNRAASASASTESPPAPPNVSSNNNVGSRWGAPRNGWGNRSGGWDRREVNPFGDQEDAAEEGAPASGEEQGNMGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQAPQRPPRGARTVYPLALVLSPTRELSVQILEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPREIQRLASDFLSNYVFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNGFPATTIHGDRSQQGLALDILKDGCELMSWKVGGGHLTSLVGTVFLSWAMVISGAQNDYSAHLSLERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARPLADLMQEANQEVPDWLSRYAARSSIGGGRNRRTGGSRFGGRDFRREGSFSRGGSDYYSTGNNSGGYGNSSGYGGGYGPGVTSAWD 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01426 700 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 156 635 - -
Vimu6g01426 700 MobiDBLite consensus disorder prediction 681 700 - -
Vimu6g01426 700 MobiDBLite consensus disorder prediction 640 676 - -
Vimu6g01426 700 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 417 635 IPR001650 -
Vimu6g01426 700 Gene3D - 409 639 IPR027417 -
Vimu6g01426 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 487 IPR027417 -
Vimu6g01426 700 CDD SF2_C_DEAD 418 605 - -
Vimu6g01426 700 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 406 IPR014001 -
Vimu6g01426 700 Pfam DEAD/DEAH box helicase 212 395 IPR011545 GO:0003676|GO:0005524
Vimu6g01426 700 SMART helicmild6 464 596 IPR001650 -
Vimu6g01426 700 MobiDBLite consensus disorder prediction 67 83 - -
Vimu6g01426 700 CDD DEADc_DDX3_DDX4 189 412 IPR044763 GO:0003724|GO:0005524
Vimu6g01426 700 MobiDBLite consensus disorder prediction 95 121 - -
Vimu6g01426 700 Pfam Helicase conserved C-terminal domain 539 596 IPR001650 -
Vimu6g01426 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 660 IPR027417 -
Vimu6g01426 700 MobiDBLite consensus disorder prediction 650 664 - -
Vimu6g01426 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 408 IPR027417 -
Vimu6g01426 700 Gene3D - 145 408 IPR027417 -
Vimu6g01426 700 SMART ultradead3 207 421 IPR014001 -
Vimu6g01426 700 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 188 216 IPR014014 GO:0003724
Vimu6g01426 700 MobiDBLite consensus disorder prediction 67 164 - -
Vimu6g01426 700 FunFam Probable ATP-dependent RNA helicase DDX4 151 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01426 Vimu-Chr6 13775573 13781128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01426 186 628 Eukaryotic Initiation Factors Gene Family AT3G19760 28.153 3.76e-52 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01426 K11594 - gmx:100781668 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01426 6 13775573 13781128 Vimu6g01426 6 13775573 13781128 ECH