Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01423 ATGGGGGAGATAGAGAGAGAGGGAGTGTTGTCGAGGGAGAAGGTAGAAGAGGAAGAAGAAGCGGAAGCCTCGGTGGAGATATGGAAGTACATATTTGGATGTGTGGAAATGGCAGTGGTGAAATGTGCGATAGAGCTTGGCATTGCTGAAGCCATAGAAAAGCATGGAAGGGCGATGACAGTGTCGGAGATATCATCAGCTCTGGGGTGTGATCCTGGTCTTCTGAAACGCATAATGAGATTCCTGGCGCACAGGAAGATATTCAAAGCCGTGACCATGGGCGGCAGCAATGGCTATACACAGACACCTCTGTCTCGTCGTTTGATGAGAGAGGGGCAACAGAGCATGGCCGCTTTTCTTTTGCTGGAGAGTAGTCCTATAATGCTAGCACCTTGGCACAGTCTAAGCGCTCGCGTCATGGCCAATGGCCGTCCCTCATTTCAAAACACTCACGGCGAAGACGTGTGGCGCTATGCCGCCGCCAATCTCGACCACAGCAACCTCATCAACGAAGCGATGGCATGCGATGCCAAGCTTGTCATGCCTGTCATCATCGAAAGTTGCAACGAGGAATTCCGTGGTCTGAAGTCGGTGGTGGACGTGGGAGGGGGCAACGGCACTGCCATGCGCATCCTCCATCAAGCTCTCCCTTCCATTCGAGCCATCAATTTCGATCTTCCCCATGTCATCGCCCAGGCCCCTCACTCCGATGGCCTCGAACACGTGGCAGGAGACATGTTCCAGAGTGTTCCTAAAGCCGACGCTGCTTTTATCATGAAAGACATGCAGTGGGTTTTGCACGACTGGTCGGACGAAGAGTGCATCGAAATCTTGAAGAAGTGTAGGGAAGCGATCTCGAAGGAAAATGGGAGGGTGATGATTGTGGAGGCGGTGATAGAAGAAGAAGAAGAAGGTAAGCCGAAGGCCCTGGAAGACGTGGGGCTGATGCTAGACATGGTGATGATGGCTCACACTAACTTTGGGAAAGAGCGGACCCTGAAAGAGTGGGAATATGTTATCAAAATGGCAGGCTTTAGCTCATACACTGTCAAATCTATTCAGGCGGTGCAGTCTGTGATTCTGGCTTTCTACTGA 1095 0.5169 MGEIEREGVLSREKVEEEEEAEASVEIWKYIFGCVEMAVVKCAIELGIAEAIEKHGRAMTVSEISSALGCDPGLLKRIMRFLAHRKIFKAVTMGGSNGYTQTPLSRRLMREGQQSMAAFLLLESSPIMLAPWHSLSARVMANGRPSFQNTHGEDVWRYAAANLDHSNLINEAMACDAKLVMPVIIESCNEEFRGLKSVVDVGGGNGTAMRILHQALPSIRAINFDLPHVIAQAPHSDGLEHVAGDMFQSVPKADAAFIMKDMQWVLHDWSDEECIEILKKCREAISKENGRVMIVEAVIEEEEEGKPKALEDVGLMLDMVMMAHTNFGKERTLKEWEYVIKMAGFSSYTVKSIQAVQSVILAFY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01423 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 361 IPR029063 -
Vimu6g01423 364 PIRSF O-mtase 7 364 IPR016461 GO:0008168
Vimu6g01423 364 Gene3D - 12 108 IPR036388 -
Vimu6g01423 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 364 IPR016461 GO:0008168
Vimu6g01423 364 PANTHER O-METHYLTRANSFERASE 37 347 IPR016461 GO:0008168
Vimu6g01423 364 Gene3D Vaccinia Virus protein VP39 110 363 IPR029063 -
Vimu6g01423 364 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Vimu6g01423 364 SUPERFAMILY "Winged helix" DNA-binding domain 17 111 IPR036390 -
Vimu6g01423 364 CDD AdoMet_MTases 198 293 - -
Vimu6g01423 364 FunFam O-methyltransferase family protein 11 108 - -
Vimu6g01423 364 FunFam O-methyltransferase family protein 110 363 - -
Vimu6g01423 364 Pfam O-methyltransferase domain 132 346 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01423 Vimu-Chr6 13762547 13763698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01423 40 350 Monolignol Biosynthesis Gene Families AT5G54160 35.202 2.32e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01423 K22588 - gmx:100782951 519.235