Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01419 ATGTTCCAACCAACGGTTTTCAGGCCCGAGGATCTTCGCAGACCATTTGGTCAATTTGGTCCTCTGAAGGACATTTACCTGCCTAAGGATTACTACTCTGGAGAACCTCGTGGGTTTGGTTTTGTCCAATACGTCGATCCTGCTGATGCAGCCGATGCTAAATATCATATGGATGGCCAAATTCTTCTTGGTCGGGAGCTCACTGTCGTCTTTGCTGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCGAGAGAAAGAAGGTGCTACAACTTTTCTCTTTACCTACTTTTGGTTCTATTTCTGAATTTCACTGACTGA 321 0.4486 MFQPTVFRPEDLRRPFGQFGPLKDIYLPKDYYSGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRCYNFSLYLLLVLFLNFTD 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01419 106 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 86 - -
Vimu6g01419 106 Gene3D - 4 92 IPR012677 -
Vimu6g01419 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 74 IPR000504 GO:0003723
Vimu6g01419 106 SUPERFAMILY RNA-binding domain, RBD 8 89 IPR035979 GO:0003676
Vimu6g01419 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 67 IPR000504 GO:0003723
Vimu6g01419 106 SMART rrm1_1 4 70 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01419 Vimu-Chr6 13746360 13747126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01419 10 85 Eukaryotic Initiation Factors Gene Family AT4G34110 32.895 2.99e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01419 K12900 - gmx:100775883 168.703