Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01402 ATGGAGAAACTGAATTTTGTCAAAAATGGGGAGCTCAGATTGCCTCCGGGCTTCCGTTTCCACCCAACCGACGAGGAATTGGTTGTGCAATACTTAAAGCGCAAGGTTTTCTCCTTCCCTTTGCCAGCCTCCGTTATTCCTGAGTTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAAAAAGAGAGGTACTTCTTCAGCACCAAAGAGCCCAAATATCCTAACGGCAACCGCTCCAACAGAGCCACCAGTTCAGGTTACTGGAAGGCCACTGGGTTGGACAAACAAATTTTAACTTCAAAAGGGAACCAAGTAGTGGGAATGAAGAAGACGCTTGTTTTCTACAGAGGAAAGCCACCTCATGGATCCAGAACCGATTGGATCATGCATGAGTATCGCCTCCTTAACCCTCCGTCTCAGGTTCCCATGGAAAACTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAAGTGGTTGTAGAAACGTGGAGGAGAAGGAGATGGAGAGTTTGAGAGGCAGAGTGGATAACAGGAAGGTGAGGAAGTTGAAGATGGTTTTTTATGACTTTTTGGCGCAGAACAAGACCGATTGCTCATCTTCTGCCGGCAGTGAAATTACCCACGAATCAGATGAGAATGAAGAGAGTAGTAGCTCCAACACCTTCCCTTATGTTAGAAGAAAACCTTGA 699 0.4592 MEKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASVIPEFDVCKSDPWDLPGDLEKERYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNPPSQVPMENWVLCRIFLKRRSGCRNVEEKEMESLRGRVDNRKVRKLKMVFYDFLAQNKTDCSSSAGSEITHESDENEESSSSNTFPYVRRKP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01402 232 MobiDBLite consensus disorder prediction 199 232 - -
Vimu6g01402 232 Gene3D NAC domain 23 162 IPR036093 GO:0003677|GO:0006355
Vimu6g01402 232 ProSiteProfiles NAC domain profile. 14 158 IPR003441 GO:0003677|GO:0006355
Vimu6g01402 232 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Vimu6g01402 232 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Vimu6g01402 232 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01402 Vimu-Chr6 13550905 13551778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01402 1 225 NAC Transcription Factor Family AT5G13180 58.893 3.83e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g01402 NAM 2.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01402 - - var:108321729 464.922