Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01401 ATGGAGAAACTGAATTTTGTGAAGAACGGGGAGCTCCGATTGCCTCCGGGCTTCCGTTTCCACCCAACCGACGAGGAATTGGTTGTGCAATACTTAAAGCGCAAGGTTTTCTCCTGTCCTTTGCCGGCCTCCGTAATTCCTGAGTTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAGAAAGAGAGGTACTTCTTCAGCACCAAAGAACCCAAATATCCTAACGGCAACCGCTCCAACAGAGCCACCAGTTCAGGTTACTGGAAGGCCACTGGGTTGGACAAACAAATTTTAACTTCAAAAGGAAACCAAGTAGTGGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAAGCCACCTCATGGATCCAGAACCGATTGGATCATGCATGAGTATCGCCTCTTTAACGCTCCGTCTCAGGTTCCCATGGAAAACTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAAGTGGTTGTAGAAACGTGGAGGAGAAGGAGATGGAGAGTTTGAGAGGTGGAGTGGATAATAGGAAAGTGAGGAAGTCGAAGATGGTTTTCTATAACTTTTTGGAACAGAGCAACACCGATTCATCATCTTCTGCCGGCAGTGGAATTACCCATGAATCAGATGAGCATGAAGAGAGCAGTAGCTCCGACACCTTCCCTTATTTTAGAAGATAA 693 0.4589 MEKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASVIPEFDVCKSDPWDLPGDLEKERYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLFNAPSQVPMENWVLCRIFLKRRSGCRNVEEKEMESLRGGVDNRKVRKSKMVFYNFLEQSNTDSSSSAGSGITHESDEHEESSSSDTFPYFRR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01401 230 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Vimu6g01401 230 MobiDBLite consensus disorder prediction 198 230 - -
Vimu6g01401 230 MobiDBLite consensus disorder prediction 210 224 - -
Vimu6g01401 230 ProSiteProfiles NAC domain profile. 14 158 IPR003441 GO:0003677|GO:0006355
Vimu6g01401 230 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Vimu6g01401 230 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 200 - -
Vimu6g01401 230 Gene3D NAC domain 23 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01401 Vimu-Chr6 13544408 13545279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01401 1 225 NAC Transcription Factor Family AT5G13180 58.566 5.55e-99 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu6g01401 NAM 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01401 - - var:108321729 422.935