Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01398 ATGTGTTTTGATTCCCTTGCAGTTGATTGCGTTGAGTTGCAGTTGCAGATGCAGTTGCAGGTTTCAAGTTCCAGGGAGAATCACAACCTCCGTTCTCACCACCATCCACAACCCAATTCCAATCCCAATCCCAATATCAATCTGTCTCTCCCTTCTCAGATTTCCAAGTTGCCCTCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGGGAATTGCCTGCTTCCAACACCAAGGAAGGACACGGACCCGCCGTCCAAATCGCTGCTCAAACTTTTACTTTCCGTGAACTTGCTGCTGCAACCAAAAACTTTAGGCCAGAATCCTTTGTAGGGGAAGGTGGTTTTGGAAGGGTCTATAAAGGCAGGCTTGAAACCACTGGTCAGATTGTTGCAGTCAAACAGTTGGACAAAAATGGTCTACAGGGTAATCGGGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTGCATCACCCTAACCTTGTGAATCTCATTGGATACTGTGCGGATGGGGAACAACGCCTCCTTGTTTATGAATTTTTGCCTTTGGGATCGTTGGAAGATCACCTTCATGATGTTCCCCCTGATAAGGAACCCCTAGATTGGAACACCAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGATTAGAATACCTGCATGACAAGGCAAATCCTCCTGTCATTTATAGAGACTTCAAGTCGTCTAACATATTACTTGACGAAGCATACCACCCTAAGCTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGAGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAGCTGACAGTGAAGTCTGATGTATATAGCTTTGGGGTTGTCTTCTTAGAGCTTATTACTGGCCGCAAAGCAATTGACAGCACCCAGCCCCATGGAGAACAGAATCTTGTCACATGGGCACGTCCACTTTTTAACGACCGCAGGAAGTTTTCAAAGTTGGCTGATCCTAGGCTGCAGGGACGGTTTCCCATGCGTGGTCTTTACCAGGCTCTAGCTGTTGCGTCAATGTGCATTCAAGAATCAGCTGCCACACGCCCTCTGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGCCAACCAGGGATATGACCCCAACAATGCTGGGCATGGTTATAGGGGGTCTAGCGATGACAAAAGGAACAGAGATGATAAAGGTGGAAGAATACTTAAAAATGATGAAGCTGGGGGATCTGGACGCAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCAAAAATGTTAAATAGAGATCTAGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGACAAAAAAGACAACAAAGTTTGCAGGAGGGCAGTTATGGTTCTAACTAA 1452 0.4663 MCFDSLAVDCVELQLQMQLQVSSSRENHNLRSHHHPQPNSNPNPNINLSLPSQISKLPSGADKLRSRSNGGSKRELPASNTKEGHGPAVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLETTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFLPLGSLEDHLHDVPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEAYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQGYDPNNAGHGYRGSSDDKRNRDDKGGRILKNDEAGGSGRRWDLEGSEKDDSPRETAKMLNRDLDRERAVAEAKMWGENLRQKRQQSLQEGSYGSN 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01398 483 Gene3D Phosphorylase Kinase; domain 1 71 184 - -
Vimu6g01398 483 Pfam Protein kinase domain 111 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01398 483 MobiDBLite consensus disorder prediction 467 483 - -
Vimu6g01398 483 FunFam Serine/threonine-protein kinase PBS1 81 184 - -
Vimu6g01398 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Vimu6g01398 483 FunFam Serine/threonine-protein kinase PBS1 185 399 - -
Vimu6g01398 483 CDD STKc_IRAK 114 382 - -
Vimu6g01398 483 PANTHER OS07G0668900 PROTEIN 40 394 - -
Vimu6g01398 483 MobiDBLite consensus disorder prediction 22 86 - -
Vimu6g01398 483 MobiDBLite consensus disorder prediction 34 56 - -
Vimu6g01398 483 MobiDBLite consensus disorder prediction 464 483 - -
Vimu6g01398 483 MobiDBLite consensus disorder prediction 392 452 - -
Vimu6g01398 483 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Vimu6g01398 483 ProSiteProfiles Protein kinase domain profile. 108 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01398 483 Gene3D Transferase(Phosphotransferase) domain 1 185 397 - -
Vimu6g01398 483 SUPERFAMILY Protein kinase-like (PK-like) 93 380 IPR011009 -
Vimu6g01398 483 MobiDBLite consensus disorder prediction 400 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01398 Vimu-Chr6 13519899 13523180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01398 91 385 Glycoside Hydrolase AT3G07070 74.576 1.23e-165 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu6g01398 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01398 K13430 - gmx:100305422 798.89