Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01393 ATGTCTATATATATAAATATATCAAAATCATGCTCACAATTCTCACACGCTCTTCCCTTCTTCGCCACCTTTCGCTTCTCGATTGCTTCCGCCATGTCACACTCTCTCCATTCCTCCGCTTTCAACACACCCAGATTGGTCCTCAAGAAGGTTCTCGCCAAATCTCAACACGAAGGTGACGGAGCTGTTGTTAGAAGAGGCATCGGAAGGACCGAGTTGAAGAATTTGGATCCCTTCCTCATGTTGGATCATTTCTCAGTCTCGCCTCCGGCTGGATTTCCCGATCACCCACACAGAGGTTTTGAAACTGTCACCTACATGTTAGAGGGAGGTATTACTCACCAAGATTTTGCCGGGCACAAGGGTACAATCAGAGCTGGTGATGTTCAGTGGATGACTGCAGGTAGGGGAATAATTCACTCCGAAATGCCCGCAGAAGAAAACAACAAGGGATTGCAATTATGGATCAATTTATCCTCCAGAGACAAAATGATCGAGCCCAACTACCAAGAACTTCCGAGCGAGAATATTCCAACAGCAGAAAGAGATGGGGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGCAATCCCCCGTGTACACACGAACTCCAACCATGTTTCTTGTTTTCTCCATGATGCCAGGAAGTGAGTGGCATCAGAGCATTCCAGAGTCATGGAATTGCTTTGTTTATGTGATTGAAGGAGAAGGGGTTTTCGGGGGTACGAGTTCATCCCCATGTGTGGCACACCATGTTCTTGTTCTTAGTCTAGGTGATGGCCTTAGCGTATGGAACAACTCTTCAAAGCCTCTGAGGTTTGTTGTGATAGGAGGACAACCACTGAACGAGCCAGTGGCTCAGTATGGGCCTTTTGTGATGAACACACAGTCTGAGATTGAGAAAACCCTTGAAGACTACCAATATGGGAGGAATGGTTTTGAGATGAGGAAGTATTGGAGGTCTCAATAG 975 0.4636 MSIYINISKSCSQFSHALPFFATFRFSIASAMSHSLHSSAFNTPRLVLKKVLAKSQHEGDGAVVRRGIGRTELKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEENNKGLQLWINLSSRDKMIEPNYQELPSENIPTAERDGVEVRVIAGESMGVQSPVYTRTPTMFLVFSMMPGSEWHQSIPESWNCFVYVIEGEGVFGGTSSSPCVAHHVLVLSLGDGLSVWNNSSKPLRFVVIGGQPLNEPVAQYGPFVMNTQSEIEKTLEDYQYGRNGFEMRKYWRSQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01393 324 CDD cupin_pirin_C 206 282 - -
Vimu6g01393 324 PANTHER PIRIN-RELATED 32 324 IPR012093 -
Vimu6g01393 324 Gene3D Jelly Rolls 178 283 IPR014710 -
Vimu6g01393 324 SUPERFAMILY RmlC-like cupins 45 322 IPR011051 -
Vimu6g01393 324 FunFam pirin 58 190 - -
Vimu6g01393 324 Pfam Pirin 65 156 IPR003829 -
Vimu6g01393 324 CDD cupin_pirin_N 62 158 - -
Vimu6g01393 324 PIRSF Pirin 43 322 IPR012093 -
Vimu6g01393 324 Gene3D Jelly Rolls 58 309 IPR014710 -
Vimu6g01393 324 Pfam Pirin C-terminal cupin domain 210 314 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01393 Vimu-Chr6 13490893 13492396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01393 42 319 Calmodulin-binding Proteins AT3G59220 65.357 6.87e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01393 K06911 - gmx:100775597 538.495