Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01387 ATGGCTTCATCTTTGGAAGAGCTTCTTGCAGAAGACGGGTTCAAAGGAATCAGAAGAGTGCCAAGGTCTAGATCTTCCTTCCACTATGGTGCTTCAAGTGAACCTCTTTACTCTATGGAAGGTAGACTTTCTGTATCAAGTGAAAGAATTCGACCGCAGAGACAAAAGTCTGATGCCTCAAGATATCAGATTACAAGTGGGCAGCTGAAAACCGACACTCACACTGCAAAGAACCGAAGATCAAGGGATAATGTTATTTTGAGAGGAGAAGTGGATGAACGGTTGGAGGTTGAAGCCCAGAATAACTCTTCTCGAGATACTGATTCAGGTGAAGCAGTTCATACCAAATCGTCAAAATACATGCCAAGGGATGAAATCACTGAGGTGATTGAACAAGAAGCTAGCAGATTTGAAGATACTTATTCAAAAGAAGTGTCTGAAAAAGGAGGCAAAGAAAAGAATCTCTATGAACTCGTGGAGGACAAAAACTGGGTGGAAAAGCCTGTCAAGGATGCAAAGGAGCAAAGCAGAAGTTCCAGCATGAACATGCGTAGACATTCGAGCGAAACTGGAAAGAAAATAAATCCCCAGAAGAGCTTTGAATACAGCAGCAGGAACAAAAGTAGAAATCTTGCCGTGCAAGTAGCTTCTAGTCTTGCTCTTGATGAAGTAGCTGTTCAAGCCGTAGTTTCCATTCTAAATGGGTATATAAATCGTTTTCCAAAGGATGAAGATTTTCGGTCCACATTGCATCACAGATGTTTCTCCTCCTTGAATTTTCGTGAATTGAGAGAAGAGAAAATTACTCAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCCGTGGAGGAACATGTATCTGCCATGTATCTGAAAAGAACAACGATGCAACTTAGTATTATCACAGGTTTGGGTTTAAATGATTTGAAATACGAGTGTACGTGTGGGATTCCGAATTATAAGTTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTCTACATGATGCAAAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCCTTTCAGGCACGGACTATGTTGTTGCCTGAACTATGGAAGCGTCTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACAAGAAGGAAGAAGGAGCTCTAGTAGACACACCAAACAAAACAAGAAGACTAAAACTTCTTCAAGAGGTGTATAATGAGCATTTGGATTCTGGAACTCATATATTTTCTGTATATTACAAAGATTGGCTTACTGAAGGAGTGGAATCTCCAATAGTTCCTTCAATTGGCATTCCATCAGTTTCTGTCTCAAGAAGTCAAGAGGGAAGTTCACTTAGTCACTCTTTTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTTAGAAGACCAGGAGTTTACCAAGTCAAAGGTGTTAAGGATGATGGTAACCAAGACAACTGCATGAAGGGCTCTTATGGTTCAACATTTGTTGAACATACATTAACATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGGTTTCTCTCAAGGTGTAGCTATTGATACAATCAAGCCTCACAAAGGAAATTCAATGGCAGCTGCAGAAGAAGCAAACATTGTTGTTGCCCTACCATACGAGAAAGCAAATGAACTTGGTCTTAAAAAGCCAAATAAGACAAGTTATGCTCTTCAAGGATCAGATTTTCCAAGCACTCCACGGGAATTTATTTGTTCTCTAACTGGAAATATCTTTGAGGAACCGGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCGGTAACAGGAATTGCCTTGAAATGCGTGGCCATTCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAGGTCAGAACGTTTTGATTGCCTTCTTGGCCTTGCTTCCAAAAGAGTGGAGAATTCAGAGGATCTCAAGTTGAAAGAAGGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGTCTTTTCTCCTCTCTGAAAGAAGAGGAGAAATCAACTTATGTTAAGCATCTCATGTCTTTAGGATTTCTTCCATTTCTTTTTAGAAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACAAGTGGTGTCACTCTTGCTAAATTGTATTCAAGTAGACTCTGGTTGCATATATAAGATAGCAAGGAATGTTAACAGAAACTGCCTTCTCGAGCTTCTTCACAGCAAGGAGGTTACCCCAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAAAAGTATTTTATATAATGCATATTCTGCTCATGTATCTCGAGAATTCTTCTCCATTTGAAAAGCCCCTAATTGCAGTCCTTTTGTTACACTTTGATCTGCTGGTTGAGCCGCAAAAGTTTAGTGCATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATAGCAGCTTAAAAGATGAGAAAGCCCGAGAAAAGTGTTGCCGAGCACTTTTAATCTTGTGTGGCCATTTTTCTTCTACCGGAAAGATACCAACCAAGACTAGCACCTTAAAACAAGCAGGTTATAACCATGATGGCATAGAAGTAACCATTTCATTGGTAAGACAAAACATTGTTTGTTCCTGTGTATACCAGATTCAATCTCTTAGCATGTGCTTAATGATACACATAGAAGATGAAGACAAAAGGTTTGAAGAGTTGCTAAAGAAGCTGTTAGAGTCGTTGATTGGTGATGGAGAAGGCCCATTTTTGAAGAGCTTATCGAGATGTTTAGATTGTAAGCACCTAGATTTGGTGAGGGCGTGTCTAATAACTGTGACATGGTTGAGTTCTTCACTATCTACACTATTTGGTGCTGGATTGCCTCTTCCCACCTTCTCATCCATCATCTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGGCTCTGGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAAAACGCTTTTGAAGACTATGGCAGAAGATGTTGCCCCCCTTTTTCACGGACTTGCTGAGGCACTATGCACTGCAAAACAACTGCATGCCACTGTTTCTAGAGAGAATTTGTAG 3255 0.4015 MASSLEELLAEDGFKGIRRVPRSRSSFHYGASSEPLYSMEGRLSVSSERIRPQRQKSDASRYQITSGQLKTDTHTAKNRRSRDNVILRGEVDERLEVEAQNNSSRDTDSGEAVHTKSSKYMPRDEITEVIEQEASRFEDTYSKEVSEKGGKEKNLYELVEDKNWVEKPVKDAKEQSRSSSMNMRRHSSETGKKINPQKSFEYSSRNKSRNLAVQVASSLALDEVAVQAVVSILNGYINRFPKDEDFRSTLHHRCFSSLNFRELREEKITQTKVIRSLEQAIEAIEQSVEEHVSAMYLKRTTMQLSIITGLGLNDLKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTMLLPELWKRLFSPQLSHLKAWYKKEEGALVDTPNKTRRLKLLQEVYNEHLDSGTHIFSVYYKDWLTEGVESPIVPSIGIPSVSVSRSQEGSSLSHSFESASSIDPFSPQPMVSKKLYDSMFGSFRRPGVYQVKGVKDDGNQDNCMKGSYGSTFVEHTLTYESETVKFTDQDIEGFSQGVAIDTIKPHKGNSMAAAEEANIVVALPYEKANELGLKKPNKTSYALQGSDFPSTPREFICSLTGNIFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGIALKCVAIPFTNLILKRLIDNWRSERFDCLLGLASKRVENSEDLKLKEGDEAAVFKLESLFSSLKEEEKSTYVKHLMSLGFLPFLFRRFEQGNVEEKSQVVSLLLNCIQVDSGCIYKIARNVNRNCLLELLHSKEVTPTTNAILFLTELLSMKRRKDVTSFISGLAGEKVFYIMHILLMYLENSSPFEKPLIAVLLLHFDLLVEPQKFSAYREVAVNAIAEALDSSLKDEKAREKCCRALLILCGHFSSTGKIPTKTSTLKQAGYNHDGIEVTISLVRQNIVCSCVYQIQSLSMCLMIHIEDEDKRFEELLKKLLESLIGDGEGPFLKSLSRCLDCKHLDLVRACLITVTWLSSSLSTLFGAGLPLPTFSSIISQLKGILENGELELKALASLSLLNFSKISECKTLLKTMAEDVAPLFHGLAEALCTAKQLHATVSRENL 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01387 1084 SUPERFAMILY ARM repeat 682 1050 IPR016024 -
Vimu6g01387 1084 Coils Coil 274 294 - -
Vimu6g01387 1084 ProSiteProfiles Zinc finger SWIM-type profile. 304 342 IPR007527 GO:0008270
Vimu6g01387 1084 Pfam U-box domain 599 668 IPR003613 GO:0004842|GO:0016567
Vimu6g01387 1084 MobiDBLite consensus disorder prediction 169 192 - -
Vimu6g01387 1084 Gene3D - 690 1074 IPR011989 -
Vimu6g01387 1084 SUPERFAMILY RING/U-box 594 668 - -
Vimu6g01387 1084 MobiDBLite consensus disorder prediction 20 119 - -
Vimu6g01387 1084 MobiDBLite consensus disorder prediction 73 101 - -
Vimu6g01387 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 671 IPR013083 -
Vimu6g01387 1084 ProSiteProfiles U-box domain profile. 597 672 IPR003613 GO:0004842|GO:0016567
Vimu6g01387 1084 PANTHER OS04G0584500 PROTEIN 587 1082 - -
Vimu6g01387 1084 CDD RING-Ubox_PUB 599 646 IPR045210 -
Vimu6g01387 1084 MobiDBLite consensus disorder prediction 57 72 - -
Vimu6g01387 1084 SMART Ubox_2 601 665 IPR003613 GO:0004842|GO:0016567
Vimu6g01387 1084 MobiDBLite consensus disorder prediction 169 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01387 Vimu-Chr6 13470664 13476801 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01387 581 871 U-box Gene Family AT1G23030 25.000 4.25e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01387 - - vra:106758533 1887.85