Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01383 ATGCCGGAGCTTCGTAGTGGACCGCGACGACGTCGTGCTCCGGTTGGTCGTAGAAGCTCGGAACAACCGTCTTCGGGGGGGAGATACGTGAAGACTCGCGCTGCAGTTGCCAGGGAGGCGGCGGCGGCGGCGGCGGAGAGGCCAAGGACTCGTTTGGCGGCTAAACAATTAGAAGAGGAGAAGCCGGTCATTGTCATATCCGATCATACGAAGAAGGAAGTTGAAGGCGGCGCGATGGGGGATGAGAGTGGTGGCCTGAGTGCAAACAAGGGTGTTGCGCAAGAAGATGATGCTAACCCAGCTCCTTTCCCGGATAGGGTTCAAGTAGGAGGATCGCCTGTCTACAAAGTGGAGAGAAAACTCGGCAAAGGAGGATTTGGACAGGTTTTTGTTGGCAGGCGAGTTACCGGTGGTAACGACCGTACCGCTGGTCCCGGTGCCACTGAGGTGGCTTTGAAATTTGAGCACAGGAACAGCAAAGGATGTAACTACGGCCCTCCTTATGAGTGGCAAGTGTACAACACCCTTGGTGGCAGTCATGGAATACCTAGAGTACACTATAAGGGGAGGCAAGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTTTGGAATTCTTCAAGCCAGGCAATGTCTGCAGAAATGGTTTCCTGCATTGCAGTGGAGTCCCTCTCAATCTTGGAGAAGATGCACTCTAGAGGCTATGTGCATGGCGATGTAAAGCCGGAGAACTTTTTACTAGGCCAACCGTCTACACCACAAGAAAAGAAATTGTATCTCGTGGACCTTGGATTAGCTACGAAGTGGAGAGACACGTCCAGTGGGCTGCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCCTATACACTCATTTTCCTTCACAAAGGCAGGTTACCTTGGCAAGGTTATCAGGGTGATAACAAGTCCTTCCTTGTCTGCAAAAAGAAGATGGGAACATCGCCTGAGATGCTGTGCTGTTTCTGCCCTGCTCCTTTTAGGCAGTTCCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCTAACTATTCTAAGTTAATTTCTTTGTTTGATGGTATGCTTGGACCAAATCCGGCATTGAGGCCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAGAAGAGGGGTAGATTGAATATTGAAGAAGAAGATGATTCACAGCCCAAAAAGAAGGTCCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTCTACAATGCAAGACAACCAATGAAGCAAAGGTATCATTATAATGTAGCGGATGCAAGATTAGCACAACATGTGGAGAGAGGGATTGCAGATGGGCTCCTCATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGTTTTTCCAGTCAAGTTTACAAGTTGTCACCATTTTTCTTACATAAGGAATGGATCATGGAGCAGTGGGAAAAAAACTATTACATTACTTCGATTGCAGGAGCTAATAATGGGAGCTCTCTTGTTGTGATGTCAAAAGGCACGCACTATACACAACAATCATACAAAGTAAGTGATTCATTCCCATTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCTCGAAATTCTGGATACACTGATCAGGTTATTGAACTTGATTTTCTCTATCCTAGTGAGGGAATCCACAGAAGATGGGATAATGGTTATAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTGATACTGAGCATTCCTAGGCGCAGGCCAGGTGATGAAACCCAGGAAACTTTGCGCACATCTCAATTTCCAAGCACACATGTTAAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGAACAGTATGCTGA 2034 0.4636 MPELRSGPRRRRAPVGRRSSEQPSSGGRYVKTRAAVAREAAAAAAERPRTRLAAKQLEEEKPVIVISDHTKKEVEGGAMGDESGGLSANKGVAQEDDANPAPFPDRVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRTAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPRVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVSCIAVESLSILEKMHSRGYVHGDVKPENFLLGQPSTPQEKKLYLVDLGLATKWRDTSSGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEEEDDSQPKKKVRLGVPATQWISVYNARQPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFSSQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTHYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNSGYTDQVIELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01383 677 MobiDBLite consensus disorder prediction 1 17 - -
Vimu6g01383 677 ProSiteProfiles Protein kinase domain profile. 115 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01383 677 MobiDBLite consensus disorder prediction 72 110 - -
Vimu6g01383 677 FunFam casein kinase 1-like protein HD16 88 433 - -
Vimu6g01383 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Vimu6g01383 677 PANTHER CASEIN KINASE-RELATED 115 639 - -
Vimu6g01383 677 CDD STKc_CK1 115 390 - -
Vimu6g01383 677 Pfam Protein kinase domain 115 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01383 677 Gene3D Transferase(Phosphotransferase) domain 1 88 436 - -
Vimu6g01383 677 SMART serkin_6 115 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g01383 677 SUPERFAMILY Protein kinase-like (PK-like) 115 398 IPR011009 -
Vimu6g01383 677 ProSitePatterns Protein kinases ATP-binding region signature. 121 153 IPR017441 GO:0005524
Vimu6g01383 677 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01383 Vimu-Chr6 13435233 13443643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01383 115 272 EF-hand Containing Proteins AT4G36070 28.313 6.17e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vimu6g01383 Pkinase 9.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01383 - - gmx:100819969 1268.45