Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01353 ATGGCAGATTCTTCTCGGGAGGAGAACGTTTACATGGCGAAGTTGGCCGAGCAGGCCGAGCGGTATGAGGAGATGGTTGAGTTCATGGAGAAGGTAGCGAAGACTGTGGAGGTTGAGGAGTTGACTGTGGAGGAGAGGAATCTTCTCTCTGTGGCGTACAAGAACGTGATTGGGGCGAGGAGGGCTTCGTGGAGGATTATATCCTCCATTGAGCAGAAGGAGGAGAGCAGAGGCAATGAGGACCACGTGGCTATTATAAAGGAGTACAGGGGAAAGATTGAGACCGAACTCAGCAAGATCTGTGATGGGATTTTGAACCTCCTTGAGTGCAACCTCATCCCTTCTGCTCAATCTCCCGAAAGTAAAGTCTTTTACCTTAAAATGAAGGGTGATTACCACAGGTACCTTGCTGAGTTTAAGACTGGGGCAGAGAGGAAAGATGCTGCAGAGAGTACTTTGCTTGCTTACAAATCCGCTCAGGATATTGCTCTTGCTGACCTGGCCCCCACCCACCCTATTAGGCTTGGACTTGCTCTCAACTTTTCTGTGTTCTATTATGAAATCCTTAACTCACCAGATCGTGCTTGTAATCTTGCCAAGCAGGCATTTGATGAGGCAATTTCCGAGCTTGACACATTGGGTGAAGAGTCATACAAAGATAGTACACTGATCATGCAACTTCTCCGTGACAACCTGACTTTGTGGACATCAGACATCACGGTATCTCTTTCTCTCTTGTACTGTATGGTACTAAAGATTTCTTGTTTTGCATTTAACTGTAGACTTCAGAGTAGAATTTTTTCTGGGCACGTTGTGTAA 819 0.464 MADSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVEVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKEYRGKIETELSKICDGILNLLECNLIPSAQSPESKVFYLKMKGDYHRYLAEFKTGAERKDAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITVSLSLLYCMVLKISCFAFNCRLQSRIFSGHVV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01353 272 Coils Coil 12 39 - -
Vimu6g01353 272 PANTHER 14-3-3 PROTEIN 6 238 IPR000308 -
Vimu6g01353 272 FunFam 14-3-3 protein epsilon 1 244 - -
Vimu6g01353 272 SUPERFAMILY 14-3-3 protein 5 238 IPR036815 -
Vimu6g01353 272 Gene3D - 1 243 IPR036815 -
Vimu6g01353 272 Pfam 14-3-3 protein 12 236 IPR023410 -
Vimu6g01353 272 PIRSF 14-3-3 1 243 IPR000308 -
Vimu6g01353 272 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Vimu6g01353 272 SMART 1433_4 6 249 IPR023410 -
Vimu6g01353 272 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Vimu6g01353 272 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Vimu6g01353 272 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Vimu6g01353 272 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Vimu6g01353 272 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Vimu6g01353 272 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Vimu6g01353 272 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01353 Vimu-Chr6 13203114 13204571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01353 4 240 14-3-3 family AT3G02520 91.561 2.10e-162 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01353 K06630 - gmx:547657 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01353 6 13203114 13204571 Vimu6g01353 6 13203114 13204571 ECH