Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01341 ATGGGTGCAACTGGCTCAGGCAAGACCAAACTCTCCATCAGCTTGGCCATGCAATTTCCCTCTGAAATCATCAACTCTGACAAAATCCAAGTTTATAAGGGTCTTGACATCATCACCAACAAGATTTCAGAATCTCAACGTTCTGGTATTCCCCATCACCTTCTTGACATCATTGACGACCCTGATTACGACTTCACCATTCATGACTTCTGCTATCATGTCCTTCACGCTCTTGATACCATCGTTCAAAACGGACACCTACCCATTATAGTGGGTGGCTCCAACACTTACCTCACAGCCTTGCTTGAGAACCCTGACGTTGCTTTTCGTTCCAAATATGATTGTTGTTTCATTTGGGTCGATGACAAAAGGGTGGACGAAATGGTTGATGCTGGAGTTGTGGATGAGATTCGAGAAGCTTTTGTTGCTGGAGCAGATTGCAGTCGTGGGATTAGAAGAGCCATTGGAGTTCCTGAGCTTGGAGAGTTTTTCCTTCGGGAGAAGGAAATAGACAACGAGGCTCAGAAGGAGAAGATGCTACGACATGCTATTATGAAAACCAAAGAGAACACTCATAAGTTGGCTGAGAGACAACTCTCGAAGATCCGAAACATGAACCATGACTTCAAAATGTTCAGAATCGATTCCACACAAGTGTTTGAGGCTGTTTTGAATGGAGTGGATTATAAGCAATTGTACGAAGAGATTGTGTTCAAACCATGCATGGAGATAGTGAAACAGTTTCTAGAAGAGACAACTGATGTGAAAAAGACATCTCAAATTGGTGAACAAGCCATGGTTTGTGTTTAA 810 0.4296 MGATGSGKTKLSISLAMQFPSEIINSDKIQVYKGLDIITNKISESQRSGIPHHLLDIIDDPDYDFTIHDFCYHVLHALDTIVQNGHLPIIVGGSNTYLTALLENPDVAFRSKYDCCFIWVDDKRVDEMVDAGVVDEIREAFVAGADCSRGIRRAIGVPELGEFFLREKEIDNEAQKEKMLRHAIMKTKENTHKLAERQLSKIRNMNHDFKMFRIDSTQVFEAVLNGVDYKQLYEEIVFKPCMEIVKQFLEETTDVKKTSQIGEQAMVCV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01341 269 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 122 211 - -
Vimu6g01341 269 Gene3D - 1 249 IPR027417 -
Vimu6g01341 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 105 IPR027417 -
Vimu6g01341 269 Coils Coil 185 205 - -
Vimu6g01341 269 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 249 IPR039657 -
Vimu6g01341 269 Pfam IPP transferase 30 105 - -
Vimu6g01341 269 Pfam IPP transferase 122 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01341 Vimu-Chr6 13110888 13111727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01341 72 263 C2H2 Transcription Factor Family AT2G27760 29.130 2.34e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01341 K10760 - gmx:121173984 404.445