Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01338 ATGCGGATGAGCTGCAATGGATGTCGAGTTCTGAGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCTTGCTTACAATGGATCAAAAGCCCAGAATCTCAGGCCAATGCTACTGTGTTTCTCGCTAAGTTCTACGGCCGTGCTGGGCTCATGAATCTCGTTAACGCCGGCCCAGAACATCTTCGTCCAGCGATCTTCCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCAGTTGGTTTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAGGCCGCCGTGGAGAACGTCTTGAAAGGCGCACCGATTACGCCGATCACGTCTGAAGCGGCGGCTAGCGGGCGAGGTCCACCCCTCAAGGCATACGACATACGCCACGTGTCAAGAGATGAGAACTCCGCCGCGTCGAACGAAACTCAGCAGCAACGAGTCAAGACTCGGTCTAGGGTCCGGCGTCCTGTCGCCAACGCCAAGCCCAAATCCACCACAAACGAAAACAACGGTGAGAAGGGAACCGAATTGGGGTCTTCTGAACCGGGTTTGATGACATGCGAGTGGACCGAAGAGGCGGTGAATCGGTCCGGAAGTCACGAATCGTCGCTGAGCCACCAGTCTGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATCCTCTTCCGAGATGAACCGGATTCAAACCCGAAGATCGTGCAACGAACCGATGATGTTGGTTTGGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCAGCACGTGGTTCCAGTGAAGAAGAGACGGATCGAGTTGAAGGATTTTAGCGGCTCGGCTGAGAGTGGGTCGTGCAAGATGGAGCTGGGGCTTGAATGCTCGGCTTGA 903 0.5581 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSRDENSAASNETQQQRVKTRSRVRRPVANAKPKSTTNENNGEKGTELGSSEPGLMTCEWTEEAVNRSGSHESSLSHQSEAANAVESESMVSVETAETSILFRDEPDSNPKIVQRTDDVGLELTLGFEPVSRAQHVVPVKKRRIELKDFSGSAESGSCKMELGLECSA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01338 300 PIRSF AS2 1 300 IPR017414 -
Vimu6g01338 300 MobiDBLite consensus disorder prediction 195 223 - -
Vimu6g01338 300 MobiDBLite consensus disorder prediction 134 223 - -
Vimu6g01338 300 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Vimu6g01338 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 257 - -
Vimu6g01338 300 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vimu6g01338 300 MobiDBLite consensus disorder prediction 163 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01338 Vimu-Chr6 13086156 13087240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01338 1 296 AS2 family AT3G02550 56.711 8.96e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu6g01338 LOB 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01338 - - gmx:100807854 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01338 6 13086156 13087240 Vimu6g01338 6 13086156 13087240 ECH