Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01324 ATGGCTGAAGTTGAATACCATGCAAAATCCACTGCTAATAGCCCACCCCTAAAGCTCTTTGGCATCAACATTAACAAGTCCCCAGAAGATCAAACCGATCACGAAGCAAGTTCCGATTCTGAGCCTTTCATTGCAAGAAAATACGAGTGTCAGTACTGTTTCAGAGAATTCGCAAACTCACAGGCACTTGGAGGGCACCAAAACGCGCACAAGAAAGAGAGACAGCTCCTGAAACGTGCTCAAATGCAGGCTGCTCGCGGCTTTGTGGCTTCACACGTTCACAACACCATCATATCAACCTTCTCACCACAATCTCAGTGGCTATGCACACCACATGCATGGTCAGGTGGTGGTGCGTATGACTCAGGAGTGGCTTTTGTGACTCCCGGAAGACGAGTCTATGCCACAGCCGGTGCCTCCATCACTGGTGGCCTTGGCCACCGCAATCCTCCGGCCGAGATCGGTGGCTTCAACGGCAGAGTTGCTACTGCTACACTATCTATCCGACCGATGTTGCATGCAGCATCTGCCCCAGGCCTTTGTTTAAGCTATCCCAGGAACATTCGCCATCCTTGTTATTTGAAAACACCTTCTGTTAAAACAAGACATTCTGTTCGCTGTTCGGTATCACAGACAAGTAATGGAGCTAAAGTGGAATATACTCCTTGGTTGATTGTTGGCTTGGGTAATCCTGGAAACAAATACCATGGCACTAGGCACAATGTTGGATTTGAAATAATTGATAGCCTTTCTAGAGCAGAAGGGATTAAGATGAACACAATACAGTCAAAGGCCTTGATTGGAATAGGTTCCATCGGAGAAGTACCAATTTTGTTGGCAAAGCCTCAGACATACATGAATTTTAGTGGAGAGTCGGTTGGGCCACTTGCTGCATATTATCAAGTACCCTTGCGTCATATTCTACTAGTTTATGATGAAACAAGCCTGCCAAATGGTGTTTTAAAGCTTCAACCAAAAGGCGGACATGGACATCACAATGGATTGAAAAATGTGATGGGCCATTTGGATGGTTGCAGTGCTTTTCCTCGACTTGCAGTAGGAATTGGAAATCCTCCTGGAACTATGGACTTGAGAGCATTTCTTCTACAAAAATTCAGTTCTGTGGAACGAAAGCAGATTGATGCTTCATTGGAGCAAGGAGTTGTAGCTGTAAGAACAGTTGTGCTGAGAGGCTTTGACCAGCATGTCAATAGATTCAATTTAGGGCAAAAGTACAAGTACCATAAAGTGTAA 1254 0.453 MAEVEYHAKSTANSPPLKLFGININKSPEDQTDHEASSDSEPFIARKYECQYCFREFANSQALGGHQNAHKKERQLLKRAQMQAARGFVASHVHNTIISTFSPQSQWLCTPHAWSGGGAYDSGVAFVTPGRRVYATAGASITGGLGHRNPPAEIGGFNGRVATATLSIRPMLHAASAPGLCLSYPRNIRHPCYLKTPSVKTRHSVRCSVSQTSNGAKVEYTPWLIVGLGNPGNKYHGTRHNVGFEIIDSLSRAEGIKMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESVGPLAAYYQVPLRHILLVYDETSLPNGVLKLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAVGIGNPPGTMDLRAFLLQKFSSVERKQIDASLEQGVVAVRTVVLRGFDQHVNRFNLGQKYKYHKV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01324 417 Gene3D - 218 417 IPR036416 GO:0004045
Vimu6g01324 417 SUPERFAMILY Peptidyl-tRNA hydrolase-like 221 407 IPR036416 GO:0004045
Vimu6g01324 417 PANTHER PEPTIDYL-TRNA HYDROLASE 208 407 IPR001328 GO:0004045
Vimu6g01324 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Vimu6g01324 417 Hamap Peptidyl-tRNA hydrolase [pth]. 222 400 IPR001328 GO:0004045
Vimu6g01324 417 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 235 248 IPR018171 GO:0004045
Vimu6g01324 417 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 328 338 IPR018171 GO:0004045
Vimu6g01324 417 NCBIfam aminoacyl-tRNA hydrolase 223 392 IPR001328 GO:0004045
Vimu6g01324 417 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Vimu6g01324 417 Pfam Peptidyl-tRNA hydrolase 224 407 IPR001328 GO:0004045
Vimu6g01324 417 Gene3D Classic Zinc Finger 29 96 - -
Vimu6g01324 417 SUPERFAMILY beta-beta-alpha zinc fingers 46 75 IPR036236 -
Vimu6g01324 417 FunFam Peptidyl-tRNA hydrolase 219 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01324 Vimu-Chr6 12944102 12949799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01324 17 112 C2H2 Transcription Factor Family AT1G67030 55.882 5.07e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01324 K01056 - gmx:100804132 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01324 6 12944102 12949799 Vimu6g01324 6 12944102 12949799 ECH