Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01301 ATGTTACCCAATTCTGTGTTGAGACCTTCTTGTTCAATGTCTCGGTATCTTCAAGAAGATAGAGAGGTAAGCAATTTCAATCTACCATTGGATTGCAATAACAATTCACTTCCATCAAATTCCATGTCCATGACTCCTTATATGATGCCTCAATTTCGTCAAGACATAGAGAGCAGCAGCAATTTAGTTCCATCAACTTTGCTAACAAATTCCATACAGAATCCCTTTTATCCGATGTTTGAGTACTGTCAACAAGACATAGAGGGGAATAATTGCAATCAAGCAATGGATTTTCATAGTAATTCGGTTTCATCAAATGTTGTCTCAAATTCTATGTTAGTGCCGTCTTGTCCTATACTTCATTATCATCAAGAAAAAGATAGAGAGCAGAGAAACACTTTCAATCTACCATTGGATTTCAACAGTAATTCAGCTTCAACAAATGTGTTGTCGAATTCCATTTCAATGCCCTCGTATCCAGTGCCTCAGTATCGTCCACAAAACATACAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGTTGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTATCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAAAGTACTGTGCAGCCATGTGACGTTGCCAAAGTTATCATGCAGAATCATGCCATGCAATTCCTCACTGATATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGGAAGAGCGTGCTGCTGGAAACATTGCAGAAGGAAGGCATTCAAGCCAAGCCACCCTGCCTGACACAGCTGGTTTTATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGTAAGTATGAAGTAA 981 0.4128 MLPNSVLRPSCSMSRYLQEDREVSNFNLPLDCNNNSLPSNSMSMTPYMMPQFRQDIESSSNLVPSTLLTNSIQNPFYPMFEYCQQDIEGNNCNQAMDFHSNSVSSNVVSNSMLVPSCPILHYHQEKDREQRNTFNLPLDFNSNSASTNVLSNSISMPSYPVPQYRPQNIQEGKLRSFWEKQLLDIQAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQFLTDIVPDNLQNFCAYGAQEERAAGNIAEGRHSSQATLPDTAGFMGNPMNVMNMGRVSMK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01301 326 Gene3D Histone, subunit A 161 274 IPR009072 GO:0046982
Vimu6g01301 326 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 168 277 - -
Vimu6g01301 326 FunFam Nuclear transcription factor Y subunit C 162 274 - -
Vimu6g01301 326 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 196 258 IPR003958 -
Vimu6g01301 326 SUPERFAMILY Histone-fold 173 267 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01301 Vimu-Chr6 12802465 12805526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01301 138 319 CCAAT-HAP5 Transcription Factor Family AT1G54830 36.702 2.34e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu6g01301 CBFD_NFYB_HMF 4.3e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01301 - K08066 gsj:114370134 175.637