Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01295 ATGGTTTCGGAGCCCGCCCTCACCTCCTTCGTCGGTGCCGATGCGGTTTTTCTCGACACCACGTATTGTAATCCTAAGTTCGTTTTTCCCTCGCAAGAGGAATCCATTGATTACGTTGCCAGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTATTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAAAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAAGATGAAGGAGGTTATGGCTGAGAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCTACCGGCTGGACCTATGAGGTAAAGCGCAGTAGGTTTGCAGTCAAGTCCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCCAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGTTAACAGAATTAGGAAGCACTTTGCCGGGTTGGTCGATGAGACTGCTAACAAGCATGAGTTTATAAGGGGTTTTTGCCGTGGCCTTGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGTTCTGGAACCAGGTCAAGGCATGGGCAAGGAAGTCATTCCATTGGAAGAGGTAGAAGGTGATAAGAGTATTGATCCAGGTGTGGCTGTGGGTTTGCATTCTTTTGTGGGAGATACTTGTACAGAAGATCCTACTTTGCTGACTGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTGTAGTTTGCCCACGTGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATCTCTGGGAGCAATGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCATGAACAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACTGATTCATTTGCAAAACCTAGCCTTAATAATGCAAACAACACTAGCAAAAATATTAACATTTTTCCTAGTCAGGATTCTAAATCAACTATCCTGAGGCATAAAGTACCTAGTCCCGTTTCTCCTGCCAAGAGGAAGAGAAGTAGTGACAGTAAGCCAAACAAAAAAGGCAAAGTCAAAGCAAAATCCGAACCAAGTGATTCAAAGCAGTCCACACTTACAAGATTCTTCAAGAAAGTAATACCTGAGATTCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGAACAAAGCTCTGAAGTTGAAGACTTGTTGCCAACTGATGTTGGACAAATTTACAAGGATGAAATTGATCAGTTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAACCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTGGATATATATTACTGTAATTCTGGAAATCTTAGCGAAAATGAATTATCAGTTCAAGAGGATAGCAAAACTGATAGACCATTAGTAAAGAAACATGTATCAGAGGAATTAAGAATTGTGACAGATATTTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTATCTCTACCACCAGAGAAATACAACCCTATAGAACATGGTTTAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAGAGGAAAGATTAAAGCTACTTCATTGTTATGCAATATGTTTAGAAGTTTGTTGGCTTTATCTCCAGCAGATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGACCATGAAAATAAGGAATTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCGTGTGGAACAAATCGTTTGAAAATACGGGAGATGTATAACAAATTTGGTGATCTCGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTACTTGCACCACCTACACCACTTCTAATCAAGGATGTTTTCTCTGCGCTACAAAAGATAAGTATATCTCGCAAGAAAGGCATCATTGTTCATCTCATGCATTCCTGCCGAGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGAAGTTTGGTGGGAGTGAAGCTTATCCTATTCCAGGGTCAAGGCACCTTATGTTACAAATTGTCAGGAACTTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCCCATGCTGTTGCTATGAATTCTAGCCCTGCTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGTTCTTTCTATAGCAGTTGTTGAAGCATATAACATACTGCCAAATCTGGAGATAGGAAGCTTGGCAGACACTAAATGTTTTCTTGTTTCTGAGCAGCTGTTGTTGAAAGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATTGTTCCAGGAATACCTATTAAGCCTATGCTAGCAAAAAATGGGGACGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTTTTGCATCAACTTTCGTAATGGATGCGGAAGTTGTTGGTATAGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCATTAGTTACAGAAGAGAGCATCAAGTTTAGTTCTCTGGATTTAATTCTGATATCTTCTATTCGTGCAGATCTGAAGGATTTATTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGAAGATGATGCTTGCTTAGCTTGCGAAGCCACATTAACTAAGATAAATACTTTCCTGGAAGAGGCAATCCACTCTTCATGCGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGTTATTTTCCATCAAAGCGTTCTGATAAATGGTTAAAAGTCAAGCGAGATTATGTAGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGTGGTATAGTGTATACTGAGTGGCTCTACTGCTCTTGTTGCACTGAGGCAGAACAGATAGAAGAGCTACCACAAAATTGCCACTTTTTTGGCCATGAAAGTGGCTATCACAAAATTACCACTTCTTTGGCCACGAGAGTGACTGCCACACCCAAAAACAGAAAATGCACCACACCAGGAATTATGGGGCGGTATAGTCCATTTCTTGTGGCGTGCTTCAATCCGGAAACAGAGGAGTACCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTATATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTATTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGCACCAGACATTTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGTGGCATTTCCATCAGATTTCCAAGATTTATTTGCTGTGTCTCTGACAGAAACCCAGATGAATGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGCTAAATAG 3819 0.4095 MVSEPALTSFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERVERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHVNRIRKHFAGLVDETANKHEFIRGFCRGLGEVGFKAEKGVSDVLEPGQGMGKEVIPLEEVEGDKSIDPGVAVGLHSFVGDTCTEDPTLLTDEEKEKIIRELSCSLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSFAKPSLNNANNTSKNINIFPSQDSKSTILRHKVPSPVSPAKRKRSSDSKPNKKGKVKAKSEPSDSKQSTLTRFFKKVIPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQIYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENELSVQEDSKTDRPLVKKHVSEELRIVTDISGQKVLKDNVDATQLSLPPEKYNPIEHGLDGQPAPYLHIARTFNLLEGERGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISISRKKGIIVHLMHSCREKEMKFLVRTLKFGGSEAYPIPGSRHLMLQIVRNLRIGAMLRTVLPALAHAVAMNSSPAFHQGGTAENLKEKLQVLSIAVVEAYNILPNLEIGSLADTKCFLVSEQLLLKDLIVPSLMNKGIDFSVSSLSIVPGIPIKPMLAKNGDETTSRFPDLIDIIKESSKPFASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTEESIKFSSLDLILISSIRADLKDLFYDEKPGYFEYAKETTIEEDDACLACEATLTKINTFLEEAIHSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGCGIVYTEWLYCSCCTEAEQIEELPQNCHFFGHESGYHKITTSLATRVTATPKNRKCTTPGIMGRYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEAPDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPDECSTASDIVEMFHSQTRKMDVTAK 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01295 1272 FunFam DNA ligase 28 184 - -
Vimu6g01295 1272 Gene3D - 972 1052 - -
Vimu6g01295 1272 Pfam DNA repair metallo-beta-lactamase 102 207 IPR011084 -
Vimu6g01295 1272 Pfam ATP dependent DNA ligase C terminal region 1137 1241 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vimu6g01295 1272 CDD OBF_DNA_ligase_I 1056 1262 - -
Vimu6g01295 1272 Gene3D - 28 184 - -
Vimu6g01295 1272 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 888 1053 - -
Vimu6g01295 1272 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 598 836 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vimu6g01295 1272 Pfam ATP dependent DNA ligase domain 888 1047 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu6g01295 1272 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 115 888 - -
Vimu6g01295 1272 FunFam DNA ligase 1131 1272 - -
Vimu6g01295 1272 Gene3D DNA ligase/mRNA capping enzyme 886 971 - -
Vimu6g01295 1272 Pfam DNA ligase N terminus 605 757 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vimu6g01295 1272 MobiDBLite consensus disorder prediction 385 411 - -
Vimu6g01295 1272 SUPERFAMILY Nucleic acid-binding proteins 1137 1263 IPR012340 -
Vimu6g01295 1272 MobiDBLite consensus disorder prediction 385 482 - -
Vimu6g01295 1272 ProSiteProfiles ATP-dependent DNA ligase family profile. 1007 1074 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vimu6g01295 1272 Gene3D - 584 885 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vimu6g01295 1272 Gene3D - 1053 1114 IPR012340 -
Vimu6g01295 1272 Gene3D - 1122 1271 IPR012340 -
Vimu6g01295 1272 SUPERFAMILY Metallo-hydrolase/oxidoreductase 10 207 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01295 Vimu-Chr6 12750172 12761864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01295 511 1263 Core DNA Replication Machinery Family AT1G08130 27.261 7.04e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01295 - - gmx:100807673 1665.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01295 6 12750172 12761864 Vimu6g01295 6 12750172 12761864 ECH