Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01289 ATGGCTTTACAGAACATTGGTGCTGCAAACAGCGATGATGCCTTCTATAGGTACAAGATGCCTAAGATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACTAATGTCGTCAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCTTCTTACACGACTAAGTATTTTGGTTGTGAGCTTGGTGCCCAGTCTAAGTTTGATGAGAAGACTGGGACTTCCCACGTCAATGGAGCTCATGATACTGCAAAACTTGCTGGCCTTCTTGAGAATTTCATCAAGAAGTATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACCGATATCATAATTACTAAGAACCAGATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCCGATGTTGATATGAGAGACAAGCTGACTACCTTCATCGTTAAGAATCCTCCAGAAGTAAAGAAAGGTTCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAGGAGAGACTCAAGGAAGGTGAAGCAGCTGATGAGGAACAAAAGAAAGTGAAGAAAGATGTTAAGAAGAAAGGTTCTTCGTCTACAAAGGATGGCACTGCAAAATCCACAATTTCAAAGAAGAAAGGAAGTGGCTCTGATGAAGACCGCACATCGCCTACTCACAGACAAATTGAAGAGAAAGAGGAGGCTCATGACGAAGATGATGATGATGATGATGGCGTGCAATGGCTGACAGATACGTCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCCGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCGGCAAGTAATGAAAATGGTGGTTCTCAGAATGGTAACTCAATGAACTACGGGACTGTGGTTGCTGAAGTGAAAGCAAATCTGAAGAAAGGCTTTGGAGCAACTGAATTGCTTTCTCGTCTTGCAGAACTTCCTGCACCTGCTCAAGAAAAGATGACTGCTCTGGTTGAAGCTCTATTTGAGGGAACAGAGAAAGGTTTTGGTAAAGTTACTCTTAAGAAGAAGAACTATTTCGCTGCTGCTGTTACAGAGGAGGGATCCCAGATTTTGTTGCTTAATGCCATTGAGGAATTCTGTTGCAAGGTTAATTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTGAAGACACTGTACGATGCTGATGTGTTGGAGGAAGAGCACGTGGTTATGTGGTATCAAAAGGGACTGAAAGGCGATAACAAGAACTCCAAGATTTGGAAGAATGCTCAACCTTTCATTGACTGGCTTCAGAATGCAGAATCAGAATCGGATGAAGAATAA 1332 0.4287 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEEQKKVKKDVKKKGSSSTKDGTAKSTISKKKGSGSDEDRTSPTHRQIEEKEEAHDEDDDDDDGVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNENGGSQNGNSMNYGTVVAEVKANLKKGFGATELLSRLAELPAPAQEKMTALVEALFEGTEKGFGKVTLKKKNYFAAAVTEEGSQILLLNAIEEFCCKVNSNALKEVALVLKTLYDADVLEEEHVVMWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESESDEE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01289 443 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 442 IPR045196 GO:0003743|GO:0006413
Vimu6g01289 443 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Vimu6g01289 443 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Vimu6g01289 443 Coils Coil 159 179 - -
Vimu6g01289 443 Gene3D - 105 145 - -
Vimu6g01289 443 MobiDBLite consensus disorder prediction 271 291 - -
Vimu6g01289 443 Gene3D - 2 104 - -
Vimu6g01289 443 MobiDBLite consensus disorder prediction 148 225 - -
Vimu6g01289 443 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vimu6g01289 443 MobiDBLite consensus disorder prediction 147 239 - -
Vimu6g01289 443 Gene3D - 290 443 - -
Vimu6g01289 443 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Vimu6g01289 443 ProSiteProfiles W2 domain profile. 284 443 IPR003307 GO:0005515
Vimu6g01289 443 SMART 542_3 352 439 IPR003307 GO:0005515
Vimu6g01289 443 SUPERFAMILY ARM repeat 293 437 IPR016024 -
Vimu6g01289 443 Pfam eIF4-gamma/eIF5/eIF2-epsilon 365 443 IPR003307 GO:0005515
Vimu6g01289 443 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vimu6g01289 443 CDD W2_eIF5 297 441 - -
Vimu6g01289 443 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01289 Vimu-Chr6 12726415 12727746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01289 1 436 Eukaryotic Initiation Factors Gene Family AT1G77840 63.348 7.91e-177 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01289 K03262 - gmx:100777906 730.709