Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01288 ATGCCTGAATCCTGCAAGTTCTGCTGTAGCAGATTTCAAGGTGAAGGTGTCACGTTGAAGTTTCTTTCATGTTTGAACGGGCTATTATCCATTTGGGAGCAATTGAGTTGCTTGGAGAGTGTTTTTCGTCTTCTAGAAAAAAGAACAGGCTGGTGCCGAGGAGGCTCGGCTGGATGCATCGTGCGCCTTACCAGGAACACTCTGAGCTTTGTAGTTGCTGTCCCACGATTTCTCAAGGAGGATCTTTGTGATAATAATCTACTGATCAACATCATTATTGCTTCTGCGCTAACTTTGAATTTCAGTATCAGCCACCTGTGGTGTCTAGCGTGTTTCTTTGAGACTTTCAGGATTTGTGTCATCATGGCCTTACAAAACATTGGTGCTAGTAACAGTGACGATGCCTTCTACAGGTACAAGATGCCAAGAATGATCACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACAAATGTTGTCAATATGGTTGATATTGCGAAAGCCTTGGCAAGGCCAGCTTCCTACACAACAAAGTATTTCGGATGTGAGCTTGGAGCCCAATCAAAGTTTGATGAGAAAACTGGAACATCCCATGTTAATGGCGCACATGATACTGCAAAACTTGCTGGCCTTCTTGAAATCTTCATCAAGAAATATGTTCAGTGTTATGGTTGTGGAAATCCTGAAACTGATATCTTAATTACTAAGAACCAAATGATCCAGCTGAAATGTGCTGCTTGTGGGTTTGTGTCTGACGTTGATATGAGAGACAAGCTAACTACTTTCATCATTAAAAACCCTCCAGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCTATGAGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAAAAACTGAAGAAAGAGGTTACTAAGAAGAAAGGAACTTCCTCTTCTAAGGATGGTGCTCCGAAATCTACCTCTTCAAGGAAAAAGGCAAATGGCTCCGATGAAGACCGGGCATCGCCTCCCCGCAGTCAAATTGATGAGAATATTGAGGCTCATGACAAGGAAGATGTGGATGACGACATAGAGTGGCAAACCGATACATCACTGGAGGCTGCTCGTCAACGAATCCAGGAACAGCTGAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAGATGAACCAGAGAAGGAGGAGAAAGCCAGAACTAAGGTAAGTGGTAATTCTGAGAATGGTAACATTTTGACCTATAGGACACTGGTTGCAGAAGTGAAAGCAAATTTGAATAAAGGTGTCAAGGCAAAAGAGTTGGTGTCCCATCTAGAAGCGCTTCCGGCATCTTCTCAGGAGAAGATGAGTGCTCTGTATGAAGCCCTGTTTGAGGGCATCGAGAAAGGGTTTGCAAAAGAAGCAATTAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCCGAGGAAGAAGGTTTGCAGTTGTTACTGTTGTGTGCAATTGAGGAATTTTCTTGTAAGTCTACTTCCAATGCGTTGAAGGAAGTTGCCCTGGTTCTGAAGGCACTCTACGACGCCGATGTGTTGGAGGAAGAGCACATAGTGCAGTGGTATCAAAAGGGACTGAAGGGCGATAATAAGAACTCTCAGATATGGAAGAATGCTCAGCCGTTCATTGAATGGCTTCAGAATGCAGAATCAGAAACGGATGAAGAATAA 1698 0.437 MPESCKFCCSRFQGEGVTLKFLSCLNGLLSIWEQLSCLESVFRLLEKRTGWCRGGSAGCIVRLTRNTLSFVVAVPRFLKEDLCDNNLLINIIIASALTLNFSISHLWCLACFFETFRICVIMALQNIGASNSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETDILITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKLKKEVTKKKGTSSSKDGAPKSTSSRKKANGSDEDRASPPRSQIDENIEAHDKEDVDDDIEWQTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKEEKARTKVSGNSENGNILTYRTLVAEVKANLNKGVKAKELVSHLEALPASSQEKMSALYEALFEGIEKGFAKEAIKKKNYLAAAVAEEEGLQLLLLCAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSQIWKNAQPFIEWLQNAESETDEE 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01288 565 Gene3D - 406 565 - -
Vimu6g01288 565 SUPERFAMILY ARM repeat 416 559 IPR016024 -
Vimu6g01288 565 Pfam eIF4-gamma/eIF5/eIF2-epsilon 487 565 IPR003307 GO:0005515
Vimu6g01288 565 MobiDBLite consensus disorder prediction 269 349 - -
Vimu6g01288 565 Gene3D - 121 225 - -
Vimu6g01288 565 SMART 542_3 473 561 IPR003307 GO:0005515
Vimu6g01288 565 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 254 IPR016190 GO:0003743|GO:0006413
Vimu6g01288 565 MobiDBLite consensus disorder prediction 268 358 - -
Vimu6g01288 565 Pfam Domain found in IF2B/IF5 132 248 IPR002735 GO:0003743|GO:0006413
Vimu6g01288 565 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 124 564 IPR045196 GO:0003743|GO:0006413
Vimu6g01288 565 FunFam Eukaryotic translation initiation factor 5 411 556 - -
Vimu6g01288 565 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 131 222 IPR016189 GO:0003743|GO:0006413
Vimu6g01288 565 Gene3D - 226 266 - -
Vimu6g01288 565 FunFam Eukaryotic translation initiation factor 5 122 225 - -
Vimu6g01288 565 SMART eIF2Bneu4 136 250 IPR002735 GO:0003743|GO:0006413
Vimu6g01288 565 CDD W2_eIF5 418 563 - -
Vimu6g01288 565 ProSiteProfiles W2 domain profile. 405 565 IPR003307 GO:0005515
Vimu6g01288 565 FunFam Eukaryotic translation initiation factor 5 220 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01288 Vimu-Chr6 12720389 12726265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01288 122 558 Eukaryotic Initiation Factors Gene Family AT1G36730 64.430 1.76e-175 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01288 K03262 - gmx:100777906 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01288 6 12720389 12726265 Vimu6g01288 6 12720389 12726265 ECH