Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01286 ATGGATGAACATATTATGTCATCTCCTAATAGATTGGTGGAATGTCGAATATGTCACAGTGAGGATGAAGAATCAACCATGGATACACCGTGTTCTTGCTGTGGCACATTGAAGTATGCACACCAAAACTGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACATGTGAAATTTGCCAACAGCAACTCAAGCCTGGCTATACTGTACGTCCACTGCCTCCTCTATTACACTATGATTCTTTTGGAGGGAACTGGGAGATTTCAAGAAGGGAGCTTCAAAACCATCAGTTCACAGCAATGTTTAGTGCTGATAATGAATTCCTAGACCTAGACTTTGAGTATTCAGCAGCACCCTCTACAAGAAGCTTGATATTTTGCCGCATTCTTACCATTATTTTTATTGGTCTTCTTCTTCTACGCCATACCCTTCCAATCATATTTATACTCAGAGGAGCAAGAGCATATTCCTTCACTGTGTTTATGTCAGTAGTGCTGACAAATATTGGAATGATTATTGTACCATTTTATATAATGGTTAAAGCTATTATTTCAATCCATCAGTTTCAATACCAGGATCATGAGCATTCTCCTATGCAAGGATCCCAGGAAAACGATATAGGACAGCCTCAGTTGCGTGTCATTCGTATAAATGATTCAGTGGTAAACTTCAGAGTGGAGTAA 684 0.3918 MDEHIMSSPNRLVECRICHSEDEESTMDTPCSCCGTLKYAHQNCVQRWCNEKGDTTCEICQQQLKPGYTVRPLPPLLHYDSFGGNWEISRRELQNHQFTAMFSADNEFLDLDFEYSAAPSTRSLIFCRILTIIFIGLLLLRHTLPIIFILRGARAYSFTVFMSVVLTNIGMIIVPFYIMVKAIISIHQFQYQDHEHSPMQGSQENDIGQPQLRVIRINDSVVNFRVE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01286 227 Pfam Protein of unknown function (DUF3675) 66 183 IPR022143 -
Vimu6g01286 227 SMART ringv_2 14 61 IPR011016 GO:0008270
Vimu6g01286 227 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 7 191 IPR033275 -
Vimu6g01286 227 FunFam Zinc finger family protein 3 70 - -
Vimu6g01286 227 CDD RING_CH-C4HC3_MARCH 15 61 - -
Vimu6g01286 227 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Vimu6g01286 227 SUPERFAMILY RING/U-box 13 64 - -
Vimu6g01286 227 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Vimu6g01286 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01286 Vimu-Chr6 12717309 12718536 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01286 2 61 C3H Transcription Factor Family AT2G37950 41.270 1.15e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01286 - - var:108321682 439.884