Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01264 ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATACGTTGGTGATGAGGCTCAGTCTAAGAGGGGTATTTTGACTCTAAAGTACCCAATTGAGCATGGAATTGTGAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAACGAGCTTCGTGTTGCCCCTGAAGAGCATCCAGTTCTGTTGACAGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTTGCCATCCAGGCCGTTCTTTCACTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTATGAGGGTTATGCTCTCCCACATGCCATCCTTCGTCTGGATCTGGCTGGTCGTGACCTCACTGATTTCTTGATGAAAATTTTGACGGAACGTGGTTATTCTTTCACCACCTCAGCAGAGCGGGAAATTGTAAGGGATGTTAAAGAAAAGCTGTCCTACATTGCCCTTGACTATGAACAAGAACTCGAGACAGCGAGGACCAGCTCATCTGTGGAGAAGAGCTATGAGTTGCCTGATGGACAGATCATCACCATTGGCGATGAGCGTTTCAGATGTCCAGAGGTTCTGTTCCAACCATCCATGATAGGAATGGAAGCTGCTGGCATTCACGAGACAACATACAACTCCATAATGAAGTGCGATGTTGATATCAGGAAGGACCTCTATGGTAACATTGTCCTTTCAGGAGGAACTACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATTTCTGCATTGGCACCCAGCAGCATGAAGATCAAGGTTGTAGCACCACCTGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCCATCCTGGCATCTCTCAGCACATTCCAGCAGATGTGGATTGCAAAGGCAGAATATGATGAGTCTGGCCCATCAATTAAGGTGAGGAGAGTTGTTTTTGAAAATGGTCCAGTTCTTTTCATGTACTTTGACAAGTTTTTGACTGGTTCATTCTGCCTTATGAGTTAG 1203 0.4655 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYELPDGQIITIGDERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIKVRRVVFENGPVLFMYFDKFLTGSFCLMS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01264 400 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Vimu6g01264 400 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vimu6g01264 400 PRINTS Actin signature 63 85 IPR004000 -
Vimu6g01264 400 PRINTS Actin signature 28 37 IPR004000 -
Vimu6g01264 400 PRINTS Actin signature 117 130 IPR004000 -
Vimu6g01264 400 PRINTS Actin signature 51 62 IPR004000 -
Vimu6g01264 400 PRINTS Actin signature 142 161 IPR004000 -
Vimu6g01264 400 PRINTS Actin signature 238 254 IPR004000 -
Vimu6g01264 400 FunFam Actin, alpha skeletal muscle 3 164 - -
Vimu6g01264 400 Pfam Actin 5 375 IPR004000 -
Vimu6g01264 400 Gene3D Actin; Chain A, domain 4 182 273 - -
Vimu6g01264 400 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Vimu6g01264 400 FunFam Major actin 260 340 - -
Vimu6g01264 400 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vimu6g01264 400 Gene3D - 140 340 - -
Vimu6g01264 400 FunFam Actin, muscle 182 273 - -
Vimu6g01264 400 SUPERFAMILY Actin-like ATPase domain 149 375 IPR043129 -
Vimu6g01264 400 SMART actin_3 7 377 IPR004000 -
Vimu6g01264 400 Gene3D - 10 371 - -
Vimu6g01264 400 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Vimu6g01264 400 PANTHER ACTIN 9 370 IPR004000 -
Vimu6g01264 400 FunFam Putative actin-related protein 5 341 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01264 Vimu-Chr6 12613854 12615594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01264 1 375 Cytoskeleton Gene Families AT3G12110 96.533 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01264 K10355 - gmx:100792119 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01264 6 12613854 12615594 Vimu6g01264 6 12613854 12615594 ECH
Vimu8g01214 8 19030430 19031962 Vimu6g01264 6 12613854 12615594 PCT