Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01261 ATGGTAAAACAAAACAAGGAATGGGTTGTGGGAATCGACCTTGGCACAACATATTCATGTGTTGTTGGCAGTAGAACTACGCCTTCTTGTGTGGCTTTCATAGAGAATCAAAGATTGATTGGTGATGTTGTTAAGAATCAGGCTGCCATGAACCCAACCAACACTCTCTTTGGTGCGCAAAAGGAGTCGTCAGATCAAGTGCACCCAAAGGTGCAGATAGCACAAGCGTGGTTTCAAAATGAACCGTCATATAGCATTTCTGTCTTCGCCTCCATCTCTGGAATCCCTTCATCCATGTCCAAGTTCTTCCTTTTTCTAACTGTATCGCGCTCCCAATCTCAGGTAACAATGGTTTCCTCTTCTCCCGTTTATGCTTTTTTTGATAGTGAAGAAAGGCAGCGTAGTGACTCACCGGTCGTTCAACCGGTAGTTGCAGGTTCCATTGAGTCTCTTCTTAGTGGGGATAGGGTGTTTGTCAGCGGGGGAGTCGATGTCGACGTCCCAGAAGATGGTTGTTCATCTTCCCCGGCAGAATATTTATGGGCCTCTCGCGAGGTTGGGGAGCAAGGTACCATATTTGTGAGTAGGGAAATCCTGTTAGGTTGGGTGGAGAATAACTGCATTCTTAGAACCCTAGGATATAATCGTTCCCTTAGACTGATAGCTTGTAGAAAGGATGAAAGAGTCTTTCATGAGGAAGACGTAGTTGGGGGAAATTACTTCTATATTTATTTGTATTCATTGTATGATATGTATATTAGACTACCCTTTACTAGGTTTCAGATGGATGTATTGCGATGCTTGAATGTAGCCCCTTCTCAGTTACATCCAAATGGTTGTGGTTATATTCAAGCGTTCGGTGTACTGTGTCAGGCCTTGGGTATTGAACCGACGACCAAGATATTTCTGTTTTTCTTCAAGACCCGTCCCAATGCAAAAAGGGGTTGGGTGTCTCTGAGTTCCATGTCGAAAAATTCCATTTTTAACCTATTTGTCGAGTCGTATAAAGACTTTAAGAACCACTTCTTTAAAGTATCTATAACCGAAATGGGTCAGCCTTTCTTTCTGAATGAGAACGGGAGTCCTAGATTTCCCTTATATTGGACCAAAAAACCCCGAACGTTAACTTCCTGGCCCTTAGAGGACATGACCGATGTTGAGCGGAGGAATTTGGATGAGTTGGTCGGTTTACCTCGTCCATTTTCCTCGAGGAAGATGATAAATTGCCTCAAATACAACGACCTCAAGTCGAGGGTGTCTGATAGGTTTCTTTGCCAAATACCTTCTTGTTATGTTGTGTAG 1302 0.4339 MVKQNKEWVVGIDLGTTYSCVVGSRTTPSCVAFIENQRLIGDVVKNQAAMNPTNTLFGAQKESSDQVHPKVQIAQAWFQNEPSYSISVFASISGIPSSMSKFFLFLTVSRSQSQVTMVSSSPVYAFFDSEERQRSDSPVVQPVVAGSIESLLSGDRVFVSGGVDVDVPEDGCSSSPAEYLWASREVGEQGTIFVSREILLGWVENNCILRTLGYNRSLRLIACRKDERVFHEEDVVGGNYFYIYLYSLYDMYIRLPFTRFQMDVLRCLNVAPSQLHPNGCGYIQAFGVLCQALGIEPTTKIFLFFFKTRPNAKRGWVSLSSMSKNSIFNLFVESYKDFKNHFFKVSITEMGQPFFLNENGSPRFPLYWTKKPRTLTSWPLEDMTDVERRNLDELVGLPRPFSSRKMINCLKYNDLKSRVSDRFLCQIPSCYVV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01261 433 FunFam heat shock 70 kDa protein-like 3 95 - -
Vimu6g01261 433 PRINTS 70kDa heat shock protein signature 44 52 - -
Vimu6g01261 433 PRINTS 70kDa heat shock protein signature 119 139 - -
Vimu6g01261 433 PRINTS 70kDa heat shock protein signature 8 21 - -
Vimu6g01261 433 SUPERFAMILY Actin-like ATPase domain 8 61 IPR043129 -
Vimu6g01261 433 Pfam Putative gypsy type transposon 253 309 - -
Vimu6g01261 433 Pfam Hsp70 protein 9 62 IPR013126 GO:0005524|GO:0140662
Vimu6g01261 433 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vimu6g01261 433 Gene3D - 1 95 - -
Vimu6g01261 433 PANTHER OS06G0165300 PROTEIN 228 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01261 Vimu-Chr6 12589469 12590925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01261 1 61 Calmodulin-binding Proteins AT3G12580 50.667 3.72e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01261 - - var:108319346 314.694