Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01259 ATGCGAGAGATTGCAGAGACCTTTCTGGAAAAACCTGTAAGGAATGCAGTGGTTACTGTTCCTGCTCATTTCAATGACTCTCAGCGTAAAGCTACAGTAGATGCAGGAACCATTGCTGGCCTTAATGTTATGCGGATAATCAATGAACCCACAGCTGCAGCTATTGCATATGGTCTTGACAAGAGAACCAAAACTGTTGGAGAGAGGAATGTTTTCGTATTTGACCTCGGAGGTGGTACCTTTGACGTGTCTATCCTCACCATTAAGGATAAGGTGTTCCAAGTTAAAGCTACTGCAGGAAACACTCACCTTGGGGGAGAAGATATTGATAACAGAATGGTGGAGTACTTTATGGAGCAGATCAAAAGGAAATACAAAGAAGACATTAGTGGAAACCCAAGAGCTCTTAGGAGGTTGAGAACTGCATGGGAAAGAGCAAAAAGGACACTCTCGTCTACACTCAGTACAAACATTGAGATAGATGCCTTATTTCAAGGCATTGACTTCTGTTCTTCGATCACTCGTGCAAAGTTCGATGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACCGTAGATAGATGTCTCAGCGATGCTAAGATGGACAAGAACAGTGTGCATGATGTTGTACTGGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGCAACTACTGCAGGAGTTCTTCAAGGGAAAGGATCTGTGCAAGAGCATCAACCCTGACGAAGCTGTTGCTAACGGTGCAGCTGTTCAAGCTGCTTTGTTGTGTGAAGGGATTAAGAATGTTCCTGACCTGGTGTTGTTGGATGTGACACCGCTGTCACTTGGTACGTATACAACGGGAGATATCATGAATGTAATGATTCCTAGGAATACTGGAATTCCTGTAAAGAGGACAGAAGAGTTTGGAACAGTTTATGATAATCAAACCAGTGCCTCGATTAAGGTTTATGAGGGTGAAAGAACGAAAGCGAGTGACAACAATTTGCTGGGGCTTTTTAGTCTTACCTTTCCTCCAGCTCCTCCTGGCTATCCTATTCTTGTGTGCTTTGCCATTGATGAAAATGGTACTCTATCTGTTTCTGCCGAGGATCAAACCACGGGAAATAAGAACCAGATTACCATATCCAACAACAAAGAGAGACTGTCAGCTGAAGAAATGAGAAGAATGATTAAAGAAGCTGAAATTTATGAGGCCGACGATAGGAAGTTCCTTAGGAAGGCTAAGGCAATAAATTCTTTGGATGATTATGTTTACAAGATGACGAATGCTTTGAAGGATAAGTATAACAGATCAAAGCTTTCCTTGACACAAAAGTTGAACATCAGTTCTGTAATTGCTAAGGCCACATATTTGCTTGATGATGATAACCAGCAGGTTGAAGTAGATGTATTAGAGGATTATCTGAAGGAACTCGAGAGTCTCTTTGGTCAGAAATTGGACACTAATGGTTAG 1458 0.4198 MREIAETFLEKPVRNAVVTVPAHFNDSQRKATVDAGTIAGLNVMRIINEPTAAAIAYGLDKRTKTVGERNVFVFDLGGGTFDVSILTIKDKVFQVKATAGNTHLGGEDIDNRMVEYFMEQIKRKYKEDISGNPRALRRLRTAWERAKRTLSSTLSTNIEIDALFQGIDFCSSITRAKFDEINMELFEECMETVDRCLSDAKMDKNSVHDVVLVGGSSRIPKVQQLLQEFFKGKDLCKSINPDEAVANGAAVQAALLCEGIKNVPDLVLLDVTPLSLGTYTTGDIMNVMIPRNTGIPVKRTEEFGTVYDNQTSASIKVYEGERTKASDNNLLGLFSLTFPPAPPGYPILVCFAIDENGTLSVSAEDQTTGNKNQITISNNKERLSAEEMRRMIKEAEIYEADDRKFLRKAKAINSLDDYVYKMTNALKDKYNRSKLSLTQKLNISSVIAKATYLLDDDNQQVEVDVLEDYLKELESLFGQKLDTNG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01259 485 FunFam Heat shock cognate 70 kDa protein 2 189 236 - -
Vimu6g01259 485 ProSitePatterns Heat shock hsp70 proteins family signature 2. 73 86 IPR018181 -
Vimu6g01259 485 FunFam Heat shock 70 kDa protein 260 412 - -
Vimu6g01259 485 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 411 477 IPR029048 -
Vimu6g01259 485 SUPERFAMILY Actin-like ATPase domain 1 61 IPR043129 -
Vimu6g01259 485 Gene3D Actin; Chain A, domain 4 106 188 - -
Vimu6g01259 485 PANTHER HEAT SHOCK PROTEIN 70KDA 1 437 IPR013126 GO:0005524|GO:0140662
Vimu6g01259 485 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 262 416 IPR029047 -
Vimu6g01259 485 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 261 412 IPR029047 -
Vimu6g01259 485 Gene3D - 413 481 IPR029048 -
Vimu6g01259 485 FunFam Heat shock 70 kDa 105 188 - -
Vimu6g01259 485 Pfam Hsp70 protein 1 476 IPR013126 GO:0005524|GO:0140662
Vimu6g01259 485 SUPERFAMILY Actin-like ATPase domain 68 256 IPR043129 -
Vimu6g01259 485 Gene3D - 1 254 - -
Vimu6g01259 485 FunFam Endoplasmic reticulum chaperone BiP 1 74 - -
Vimu6g01259 485 Gene3D - 62 236 - -
Vimu6g01259 485 ProSitePatterns Heat shock hsp70 proteins family signature 3. 210 224 IPR018181 -
Vimu6g01259 485 PRINTS 70kDa heat shock protein signature 239 259 - -
Vimu6g01259 485 PRINTS 70kDa heat shock protein signature 344 360 - -
Vimu6g01259 485 PRINTS 70kDa heat shock protein signature 16 36 - -
Vimu6g01259 485 PRINTS 70kDa heat shock protein signature 265 284 - -
Vimu6g01259 485 PRINTS 70kDa heat shock protein signature 79 89 - -
Vimu6g01259 485 PRINTS 70kDa heat shock protein signature 207 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01259 Vimu-Chr6 12575090 12576547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01259 1 476 Calmodulin-binding Proteins AT3G12580 66.180 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01259 K03283 - gmx:102667578 686.411