Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01258 ATGGCAAGAAAAAACGAGGGATGTGCAGTGGGGATAGACCTCGGAACAACGTACTCGTGTGTTGCAGTATGGCAGGAGCAGCAGGGGCGAGTGGAGATCATCCACAATGACCAAGGCAACAACATCACTCCTTCTTTTGTTGCTTTCACTGAAAAACAAAGATTGATAGGTGATGCTGCTAAAAACCAGGCTGCCACCAATCCAGAGAACACTGTGTTTGATGCTAAGAGATTAATTGGTCGGAAGTATAGCGATCCCATTGTTGAAAAAGATAAAAGGTTGTGGCCATTCAAGGTCATTCCTGGTGATGATGACAAACCCATGGTAGTAGTTAATTACAAGGATCAGTAA 351 0.4416 MARKNEGCAVGIDLGTTYSCVAVWQEQQGRVEIIHNDQGNNITPSFVAFTEKQRLIGDAAKNQAATNPENTVFDAKRLIGRKYSDPIVEKDKRLWPFKVIPGDDDKPMVVVNYKDQ 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01258 116 Pfam Hsp70 protein 9 115 IPR013126 GO:0005524|GO:0140662
Vimu6g01258 116 FunFam heat shock 70 kDa protein-like 3 99 - -
Vimu6g01258 116 SUPERFAMILY Actin-like ATPase domain 8 113 IPR043129 -
Vimu6g01258 116 PANTHER HEAT SHOCK PROTEIN 70KDA 9 112 IPR013126 GO:0005524|GO:0140662
Vimu6g01258 116 PRINTS 70kDa heat shock protein signature 60 68 - -
Vimu6g01258 116 PRINTS 70kDa heat shock protein signature 8 21 - -
Vimu6g01258 116 PRINTS 70kDa heat shock protein signature 38 50 - -
Vimu6g01258 116 FunFam Heat shock 70 kDa protein 4 46 116 - -
Vimu6g01258 116 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vimu6g01258 116 Gene3D - 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01258 Vimu-Chr6 12574617 12575044 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01258 1 116 Calmodulin-binding Proteins AT3G12580 70.690 1.57e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01258 K03283 - gmx:102667578 199.134