Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01256 ATGGCAAAACAAAACAAGGAATGGGTTGTGGGAATCGACCTTGGCACAACATATTCATGTGTTGCTGTATGGCTTGAAGAACACTGTCGTGTGGAGATCATTCACAATGACCAGGGGAATAGAACTACGCCTTCTTGTGTGGCTTTCACAGAGAACCAAAGATTGATTGGTGATGCTGCTAAGAATCAGGCTGCCATGAACCCAACCAACACTCTCTTTGATGTGAAAAGGTTAATCGGCAGAAAATATAGTGATCCCATCATTCAGGACGATCTAAAGTTGTGGCCATTTAAGGTCATTGCTCATTCTGATGACAAACCCATGATGGTTGTTTCATACAAGGGTCAGGAGAAACACATTTCAGCTGAAGAAATCTCATCTATGGTCCTTACAAAGATGCGGGAGATTGCAGAAGCGTACTTGGAATCAGAGGTTAAGAATGTTGTGGTTACCGTGCCTGCTTATTTTAATGATTCTCAACGACAAGCAACAAAAGATGCTGGTACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAGCCCACAGCTGCTGCTCTGGCATATGGTCTTGACAAGAGAGCTAATTGTGTTGGAGAGCGGAATATTTTCATTTTTGATTTTGGTGGTGGAACATTTGATGTGTCTCTGCTAACAATCAAAGATAAAGGTGATGTCTTTGAGGTCAAGGCCACTGCTGGTGACACACACCTTGGAGGAGAGGACATGGATAACAGAATGGTGAAATACTTTGTTGAGGAGTTCAAGAGGAAACAGAAAGTGGACCTAAGTGGGAATCAGAGAGCCTTGAGGAGGTTGAGAACTGCTTGTGAGAGAGCAAAAAGGACACTCTCGTATGCTGTTGATACCACCATTGAGATAGATGCTTTATCTGGGAGCATTGACTTCTGCTCGTCAATCACTCGTGCAAGATTTGAGGAACTTAACTTAGACCTCCTTCAAAGGTGTATGGAGACAGTAGACAGGTGTCTTGTTGATTCTAAGATGGACAAGAGTGATGTAGACGATGTTGTACTGGTTGGTGGTTCTTCTAGGATTCCCAAAGTACAGCAGCTATTGCAAGACTACTTCAAGGGGAAAGAACTGTGCATGAGCATCAACCCTGACGAGGCTGTTGCCTATGGAGCAGCAGTACAGGCTGCTTTGCTGACTAAAGGCAACAAATTTGTCCCCAACTTAGTGCTATTGGATGTTACGCCGCTGTCACTTGGTATATCTGTACAAGGAGATCTCATGAGTGTCTTGATTCCTAGGAACACCACCATTCCTGTTGTAAAAAAGGGTGGATATGCAAGAACCGAAGATTTCCAATCTGCAGTCTCTATTGAGGTTTACGAGGGTGAAAGGACAAGAGCAAGCGATAACAATTTGCTTGGTTTCTTTAATCTTTATGGCAATCCTAAAGCTCTTCGAGGCCATCCTTTAACTGTATGTTTCAGTATAGATGCTGATGGTATCCTAACTGTAATTGCTGAGGAAGAAAGCAGTGGAAGTAGGAATTGGATTACCGTAACCAACGACAAGGGAAAACTATCAACTCAACAAATTACGAGAATGATTCAAGAAGGCGAGAAATACAAGGCTGAAGATCAGAAGTACCAAAAGAAAGTTTTGGCAATTAATGCTTTGGATGACTTCCTTTACAAGATAAGGAATGCTATAGATGATGTAGATAATCCACAAGAGAAAACGAAGATCAACATGGCTATTGCAGAGGCCGAGAAATTGCTTGATGCTAGGGAGAAGACAGAAACATATGTTTTTGTGGATCATCTGCACATGATGAAGAGCCTCATTGAACCCATTATGAAGATTAACTAG 1842 0.4235 MAKQNKEWVVGIDLGTTYSCVAVWLEEHCRVEIIHNDQGNRTTPSCVAFTENQRLIGDAAKNQAAMNPTNTLFDVKRLIGRKYSDPIIQDDLKLWPFKVIAHSDDKPMMVVSYKGQEKHISAEEISSMVLTKMREIAEAYLESEVKNVVVTVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAALAYGLDKRANCVGERNIFIFDFGGGTFDVSLLTIKDKGDVFEVKATAGDTHLGGEDMDNRMVKYFVEEFKRKQKVDLSGNQRALRRLRTACERAKRTLSYAVDTTIEIDALSGSIDFCSSITRARFEELNLDLLQRCMETVDRCLVDSKMDKSDVDDVVLVGGSSRIPKVQQLLQDYFKGKELCMSINPDEAVAYGAAVQAALLTKGNKFVPNLVLLDVTPLSLGISVQGDLMSVLIPRNTTIPVVKKGGYARTEDFQSAVSIEVYEGERTRASDNNLLGFFNLYGNPKALRGHPLTVCFSIDADGILTVIAEEESSGSRNWITVTNDKGKLSTQQITRMIQEGEKYKAEDQKYQKKVLAINALDDFLYKIRNAIDDVDNPQEKTKINMAIAEAEKLLDAREKTETYVFVDHLHMMKSLIEPIMKIN 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01256 613 Gene3D - 194 370 - -
Vimu6g01256 613 Pfam Hsp70 protein 9 611 IPR013126 GO:0005524|GO:0140662
Vimu6g01256 613 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 398 551 IPR029047 -
Vimu6g01256 613 Gene3D - 73 128 - -
Vimu6g01256 613 PANTHER HEAT SHOCK PROTEIN 70KDA 9 578 IPR013126 GO:0005524|GO:0140662
Vimu6g01256 613 FunFam heat shock 70 kDa protein-like 73 128 - -
Vimu6g01256 613 SUPERFAMILY Actin-like ATPase domain 200 390 IPR043129 -
Vimu6g01256 613 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 399 418 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 38 50 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 341 357 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 60 68 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 148 168 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 8 21 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 479 495 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 211 221 - -
Vimu6g01256 613 PRINTS 70kDa heat shock protein signature 373 393 - -
Vimu6g01256 613 FunFam Heat shock 70 kDa 239 322 - -
Vimu6g01256 613 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vimu6g01256 613 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 396 547 IPR029047 -
Vimu6g01256 613 FunFam Heat shock 70 kDa protein 394 548 - -
Vimu6g01256 613 Gene3D Actin; Chain A, domain 4 239 322 - -
Vimu6g01256 613 FunFam Heat shock protein 70 10 200 - -
Vimu6g01256 613 ProSitePatterns Heat shock hsp70 proteins family signature 3. 344 358 IPR018181 -
Vimu6g01256 613 Gene3D - 548 612 IPR029048 -
Vimu6g01256 613 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vimu6g01256 613 Gene3D - 10 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01256 Vimu-Chr6 12560793 12562901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01256 1 610 Calmodulin-binding Proteins AT3G12580 65.964 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01256 K03283 - gmx:102667578 827.009