Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01243 ATGATTGTTGTAAACTACAAGGGCGAGGAGAAACAGTTTGCTGCTGAGGAGATTTCCTCTATGGTCCTCATGAAGATGCGTGAGATTGCCGAGGCTTATCTCGGATCAGCTGTAAAGAATGCTGTGGTCACAGTTCCTGCATACTTCAATGATTCCCAGCGTCAGGCTACAAAGGATGCTGGAGTCATTGCTGGCCTTAATGTCATGCGTATCATCAATGAACCCACCGCGGCTGCCATTGCTTATGGTCTTGACAAGAAGGCCTCTAGTGTGGGTGAGAAAAACGTGTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTCTCTCTTCTTACTATCGAGGAGGGCATTTTTGAAGTTAAGGCCACTGCTGGAGATACTCATCTTGGAGGTGAAGATTTTGACAACAGAATGGTTAACCATTTTGTTCAGGAGTTTAAGAGGAAACACAAGAAGGACATTAGTGGGAACCCAAGGGCGCTTAGGCGATTGAGGACTGCCTGTGAGAGGGCGAAGAGGACTCTCTCGTCTACTGCACAGACCACAATTGAGATTGATTCTCTTTACGAAGGTGTTGACTTCTACACAACTATCACCCGTGCTAGGTTTGAGGAGCTTAACATGGATCTGTTCAGAAAGTGTATGGAACCTGTTGAAAAGTGTCTGAGGGATGCGAAGATGGACAAGAGCTCCGTCGACGATGTTGTCCTAGTTGGTGGATCCACTAGAATTCCCAAAGTGCAGCAGCTGTTGCAAGATTTCTTTAATGGCAAGGAACTTTGCAAGAGTATCAATCCAGACGAGGCTGTTGCCTATGGAGCTGCTGTTCAGGCAGCAATATTGAGTGGTGAGGGTAACGAGAAAGTGCAGGACCTGTTGCTGTTGGACGTTACACCCCTTTCTCTTGGTTTGGAAACTGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACCACCATTCCAACCAAGAAGGAGCAAGTGTTCTCTACTTACTCCGACAACCAACCCGGTGTCTTGATTCAGGTATTCGAGGGAGAGAGAGCCAGAACCAGGGACAACAACTTGTTGGGTAAATTTGAGCTTTCTGGCATTCCCCCAGCACCCAGAGGTGTTCCTCAGATCACCGTTTGCTTTGACATAGATGCCAACGGTATCTTGAATGTCTCAGCAGAGGACAAGACCACCGGGCAGAAAAACAAGATTACTATTACAAACGACAAGGGTAGACTCTCAAAGGAGGATATTGAGAAGATGGTCCAGGAGGCAGAGAAGTACAAGGCAGAGGATGAGGAGCACAAGAAGAAGGTCGATGCAAAGAATGCACTGGAAAATTATGCCTACAACATGAGGAACACTATTAAGGATGAGAAAATTGCTTCCAAGCTTTCTGCCGATGATAAAAAGAAGATTGAAGATGCTATTGAGAGTGCTATTCATTGGTTGGACAGCAACCAACTTGCCGAAGCAGATGAGTTCGAAGACAAGATGAAGGAGCTGGAGAGCATCTGCAACCCAATAATTGCGAAGATGTACCAGGGTGCCGGTGCTCCCGACATTCCTGGAGGCATGGATGAAGATGTTCCTGCATCTGCGTCTGGTGGTGCTGGTCCCAAGATCGAAGAAGTTGATTAA 1635 0.4679 MIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSAVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLSADDKKKIEDAIESAIHWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGAPDIPGGMDEDVPASASGGAGPKIEEVD 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01243 544 FunFam Heat shock cognate 70 kDa protein 2 214 261 - -
Vimu6g01243 544 Gene3D - 22 279 - -
Vimu6g01243 544 FunFam Heat shock 70 kDa protein 434 544 - -
Vimu6g01243 544 PRINTS 70kDa heat shock protein signature 232 248 - -
Vimu6g01243 544 PRINTS 70kDa heat shock protein signature 41 61 - -
Vimu6g01243 544 PRINTS 70kDa heat shock protein signature 264 284 - -
Vimu6g01243 544 PRINTS 70kDa heat shock protein signature 291 310 - -
Vimu6g01243 544 PRINTS 70kDa heat shock protein signature 372 388 - -
Vimu6g01243 544 PRINTS 70kDa heat shock protein signature 104 114 - -
Vimu6g01243 544 SUPERFAMILY Actin-like ATPase domain 2 86 IPR043129 -
Vimu6g01243 544 Gene3D Actin; Chain A, domain 4 130 213 - -
Vimu6g01243 544 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 286 440 IPR029047 -
Vimu6g01243 544 Gene3D - 441 514 IPR029048 -
Vimu6g01243 544 FunFam Heat shock 70 kDa 130 213 - -
Vimu6g01243 544 FunFam Heat shock 70 kDa protein 94 154 - -
Vimu6g01243 544 FunFam Endoplasmic reticulum chaperone BiP 6 93 - -
Vimu6g01243 544 SUPERFAMILY Actin-like ATPase domain 93 283 IPR043129 -
Vimu6g01243 544 Pfam Hsp70 protein 2 513 IPR013126 GO:0005524|GO:0140662
Vimu6g01243 544 FunFam Heat shock 70 kDa 286 440 - -
Vimu6g01243 544 PANTHER HEAT SHOCK PROTEIN 70KDA 1 477 IPR013126 GO:0005524|GO:0140662
Vimu6g01243 544 Gene3D - 2 21 - -
Vimu6g01243 544 ProSitePatterns Heat shock hsp70 proteins family signature 3. 235 249 IPR018181 -
Vimu6g01243 544 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 438 519 IPR029048 -
Vimu6g01243 544 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 287 444 IPR029047 -
Vimu6g01243 544 MobiDBLite consensus disorder prediction 515 544 - -
Vimu6g01243 544 ProSitePatterns Heat shock hsp70 proteins family signature 2. 98 111 IPR018181 -
Vimu6g01243 544 Gene3D - 87 261 - -
Vimu6g01243 544 Coils Coil 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01243 Vimu-Chr6 12488024 12491394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01243 1 544 Calmodulin-binding Proteins AT3G12580 94.139 0.0 1030
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01243 6 12488024 12491394 Vimu6g01243 6 12488024 12491394 ECH
Vimu6g01243 6 12488024 12491394 Vimu6g02624 6 22884207 22887486 ECH
Vimu6g01243 6 12488024 12491394 Vimu3g01346 3 24843402 24843770 ECH
Vimu6g02624 6 22884207 22887486 Vimu6g01243 6 12488024 12491394 ECH
Vimu3g01346 3 24843402 24843770 Vimu6g01243 6 12488024 12491394 ECH