Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01238 ATGAACTTGTGCATAGTATCTGTGACATTTGCAGCAGTGTGGATGAACACTAGCCGTGACATTGGCAATAATGTGAATTCGGGCATCATGATCTTTAGAAGACTTGTCCTATTTCTGGCTTTTATGGTGGCAAATTCAACAGCTCTTGCGGATCAACAGACATATATAGTTCACATTGACAAGACTAAGATCAGAGCCTCAATTCATTCTCAAGACAGCTCAAAGCCATGGTTTGAATCCATCATTGATTTTATTTCTGAAGCTTCAATGCAAGAAGACGGAGAAGAAGAGATTTTAGGCCCTCAACTCCTTTATGCCTATGAAACCAGCATGTTTGGTTTTGCTGCCCATCTTTCCAAGAAACACCTCAAATACTTGAACCAAGTTGAGGGTTTCCTCTCAGCCATACCTGATGAACTATCAACACTCCACACAACGTACAGCCCACAGTTTCTTGGTCTAAGGAGTAGAAGAGAACTTTGGACTGCTTCTAACTTGGCCAATGATGTGATCATTGGGGTTCTTGATTCAGGAATATGGCCTGAACACACCAGTTTCCAAGACTCAGGTTTGTCCCCAGTGCCTTCTCATTGGAAAGGTGTTTGTGAGAAAGGCACTAAGTTCTCTTCCTCAAATTGCAATAAGAAGCTTATTGGTGCAAGAGCCTATTTCAAGGGGTATGAAAAATATTTTGGAAAAAAAATCAATGAAACAGTGGATTACCTTTCTCCAAGAGATTCCCAGGGTCATGGAACACACACTGCCTCAACTGCAGCAGGTGATATGGTGAAAAATGCCAACTTTCTTGGCCAGGCTAGAGGTACAGCAACTGGAATGAGGTATACTTCTAGAATTGCAGCTTATAAAGTATGTTGGTCTTCTGGTTGTACTAATTCTGATGTATTAGCTGCTATGGACCAAGCAGTTTCTGATGGGGTTGATGTGTTGTCACTCTCTTTAGGGAGTATTCCCAAACCTTTTTACAGTGATAGTATTGCCATAGCTTCATTTGGGGCAACCCAGAAAGGGGTTTTGGTTACTTGCTCCGCAGGCAATTCAGGCCCCTTTCCATCAACGGTTGGAAATGGTGCTCCATGGATCATGACAGTTGCTGCTAGCTCCACCGACCGAACCTTTCCAACAAAAGTAAAGCTTGGGAATGGACAAATTTTCAAAGGGTCATCTTTATATCAAGGTAAGAAGACAACCCAAATGCCCCTTGTGTATGGCAAATCAGCAGGTGCAACCAAGGAAGCACAGTATTGCACTGAAGGCTCCCTTGATCCAAAGCTTGTGCATGGGAAAATAGTTGCTTGTGAAAGAGGAATAAATGGTAGAACTGAGAAAGGAGAGGAAGTGAAAATGGCAGGTGGGTCTGGAATGATTCTTCTCAACAATGAATACCAAGGAGAAGAGCTTTTTGCTGACCCTCATATTCTGCCAGCCACATCCTTGGGGGCTTCTGCAAGCAAGATTGTCAGAAGCTATAGTGAATCTGTAAAAAAACCAACAGCTTCAATTTCCTTTATGGGGACAAAGTTCAGGGACCCTGCACCAGTGATGGCAGCATTTTCTTCAAGAGGACCAAGTTTAGTGGGATCAGATGTGATTAAGCCTGATGTGACTGCACCTGGTGTGAACATTTTGGCTGCTTGGCCACCCAAAATCAGCCCAAGCTTTCTCAAGAGTGACAAAAGAAAAGTATCATTCAACATACTTTCAGGTACTTCAATGTCTTGTCCTCATGTCAGTGGCATAGCAGCACTGCTCAAGTCTTTGCACAAAGATTGGTCCCCTGCAGCCATTAAATCTGCTCTCATGACTACTGCATACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCTTCTAATGACTCACCATTGGCTACTCCCTTTGTATTTGGTTCAGGCCATGTTAACCCTGTAAGTGCTTCTGATCCAGGGTTAGTGTATGATATCAGCACCAAAGACTACTTCAATTATCTTTGCAGCATAAACTATACTTCTTCTCAGATTGCTTTATTATCAAGAAGTAACTTTGTATGTTCTAGAAAAGCATTTCTACAAGCTGGTGACTTGAACTACCCTTCATTTGCTGTTGTATTTGGCAGAAGTGCCTTTAATGCTAGTGTGACATACAGAAGGGTTGTCACAAATGTTGGAAAATCCCGAAGTTCTTACGCAGTTAAAGTGGAACAACCGAATGGAGTTTCAGTTAGTGTTGAACCAAGGAAATTGAAGTTTGAAAAAGTGGGTCAGAAATTAAGCTATAATGTGACATTTTTGGCAACTGGAGGAGGTAAAGTTGCTGGTAGTTCATCATTTGGGTCACTGATTTGGGTATCTGACAGATATAAAGTTAGAAGTCCTATAGCAATAACCTGGCAATAG 2397 0.4205 MNLCIVSVTFAAVWMNTSRDIGNNVNSGIMIFRRLVLFLAFMVANSTALADQQTYIVHIDKTKIRASIHSQDSSKPWFESIIDFISEASMQEDGEEEILGPQLLYAYETSMFGFAAHLSKKHLKYLNQVEGFLSAIPDELSTLHTTYSPQFLGLRSRRELWTASNLANDVIIGVLDSGIWPEHTSFQDSGLSPVPSHWKGVCEKGTKFSSSNCNKKLIGARAYFKGYEKYFGKKINETVDYLSPRDSQGHGTHTASTAAGDMVKNANFLGQARGTATGMRYTSRIAAYKVCWSSGCTNSDVLAAMDQAVSDGVDVLSLSLGSIPKPFYSDSIAIASFGATQKGVLVTCSAGNSGPFPSTVGNGAPWIMTVAASSTDRTFPTKVKLGNGQIFKGSSLYQGKKTTQMPLVYGKSAGATKEAQYCTEGSLDPKLVHGKIVACERGINGRTEKGEEVKMAGGSGMILLNNEYQGEELFADPHILPATSLGASASKIVRSYSESVKKPTASISFMGTKFRDPAPVMAAFSSRGPSLVGSDVIKPDVTAPGVNILAAWPPKISPSFLKSDKRKVSFNILSGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDMASNDSPLATPFVFGSGHVNPVSASDPGLVYDISTKDYFNYLCSINYTSSQIALLSRSNFVCSRKAFLQAGDLNYPSFAVVFGRSAFNASVTYRRVVTNVGKSRSSYAVKVEQPNGVSVSVEPRKLKFEKVGQKLSYNVTFLATGGGKVAGSSSFGSLIWVSDRYKVRSPIAITWQ 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01238 798 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 55 794 IPR045051 -
Vimu6g01238 798 CDD PA_subtilisin_like 383 507 - -
Vimu6g01238 798 PRINTS Subtilisin serine protease family (S8) signature 246 259 IPR015500 -
Vimu6g01238 798 PRINTS Subtilisin serine protease family (S8) signature 167 186 IPR015500 -
Vimu6g01238 798 PRINTS Subtilisin serine protease family (S8) signature 574 590 IPR015500 -
Vimu6g01238 798 CDD Peptidases_S8_3 142 611 IPR034197 -
Vimu6g01238 798 Gene3D - 664 797 - -
Vimu6g01238 798 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 41 144 IPR037045 -
Vimu6g01238 798 ProSiteProfiles Serine proteases, subtilase domain profile. 146 647 - -
Vimu6g01238 798 Pfam Subtilase family 168 616 IPR000209 GO:0006508|GO:0008236
Vimu6g01238 798 FunFam subtilisin-like protease SBT1.5 376 514 - -
Vimu6g01238 798 Pfam Fibronectin type-III domain 694 795 IPR041469 -
Vimu6g01238 798 FunFam Subtilisin-like protease SBT1.5 664 798 - -
Vimu6g01238 798 ProSitePatterns Serine proteases, subtilase family, serine active site. 575 585 IPR023828 -
Vimu6g01238 798 SUPERFAMILY Subtilisin-like 143 651 IPR036852 GO:0004252|GO:0006508
Vimu6g01238 798 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 172 183 IPR023827 -
Vimu6g01238 798 Gene3D Peptidase S8/S53 domain 169 660 IPR036852 GO:0004252|GO:0006508
Vimu6g01238 798 Gene3D - 376 514 - -
Vimu6g01238 798 FunFam Subtilisin-like protease SBT1.5 169 387 - -
Vimu6g01238 798 Pfam PA domain 405 489 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01238 Vimu-Chr6 12466244 12470639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01238 52 798 Subtilisin-like Serine Gene Family AT1G01900 54.740 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01238 - - gmx:100790006 1365.13