Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01237 ATGGATAACTATGGATCATCTTCTCCATACCGGTATCCAAGCCCATATGGGTACCCTTCCAACCCTCATCAACCATACCCTCCTCCTCCAGTTTCAGCTCCTGATCCATATGCACAAGCTCCTTATCCTTCATATCCTTACCTTTCTTCACATTCCTTCAACTATTCTCACCATGGACCTCCTAGACCTTCTTCACATTCTGGCCATTTTGAGTATTCTTATCCTCCTAACGCCATGGATTTTTCTCACCCTCCTCCACCATCTTATGCTCCTCCTCCCACTTATCCTTATCCCTACCATGTGCCTCCACCGAATCATGGCTCTCCTGGGCCTCCCCCTTTTCACCAGCCCAGTTACCAATATGGTTCACCTCAATACTATTATCCACCAAAAGAGTCCTATTCGCCGCCTCCTGATATCCATTCCGGCACCAATAGCTTCTCTAGTCCCTATTGGCAGGATAATACAAGCACTGCTGAAGGAGGTAAAGTGTCACAAAGTAGTGACAATTCCATTTCCATGCATTCTCAGGGTTCTTCTTACCCAGCTCTGGATGATCTTATGAGCAATGTTAGGTTGTCTGATGGCCAACCAACTGCTCCTGCATCACCTCCTGCGCCTGCAGGGCATCCGCTTATGCATTCCATTTCAGTTCCTAAGTTGCAACAGAAGAAGGAGGAGGAGTTTTATGGATATTCTAATAACTCCTTCTCAGGGTGGGGATCCTCCTATCCCACTCGGATGAATTCTTCTAGTCTTTCAGATTTTTCTGGCTCATTTAACGAATCAGTGTATGGTGAGCGTTTGCAGATTGTTCCAGTGCAGAATAAAGGGTCCTTGAGAGTTTTGCTCCTCCATGGAAATTTAGATATATGGGTCCATGAAGCCAAGAATCTTCCAAATATGGACATGTTTCACAAAACTTTAGGTGATGTGTTTGGTAAATTGCCTGGTGGTGTGAGCAATAAAATTGAAGGAACTATGAATAAGAAGATTACCAGTGATCCTTATGTATCGATTTTAGTATCCAATGCTGTAATTGGGAGGACTTATGTCATTAGCAACTCTGAAAACCCTGTTTGGTGGCAACATTTCTATGTTCCTGTCGCACATCATGCTGCAGAAGTACACTTTCTTGTTAAAGACAGTGATATTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAGCGAATATACTCAGGAGAAACAGTTGAAGGTTTTTTCCCTATCCTGAATAGTAATGGGAAGCCGTGTAAGCAAGATGCTGTCCTGAGACTATCCATTCAGTACATACCTATGGAGAAAATGAGCATTTATCACAAAGGAATTGGAGCAGGGCCTGAATACGTGGGGGTTCCTGGAACATATTTTCCTTTGAGGAAAGGTGGAACTGTTACTCTGTATCAAGATGCTCATGTTCCAGATGGAAGCCTCCCTAATGTGTTGCTTGACAGTGGGATGTACTATGCGCATGGAAAGTGTTGGCAAGATATCTTTGACGCCATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGTTGGTCAGTGTGGCACAAAGTAAGGTTGATTAGGAATGCTGCTGGTTATTCTCCAGATTATACCTTGGGTGATCTTCTGAGGTCAAAGTCACAGGAAGGAGTAAGAGTGCTTCTGCTTATCTGGGATGATCCTACATCAAGAAGCATTTTAGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGACGATTTTTCAAGCACTCTTCAGTGCAAGTGCTTCTTTGTCCTCGCAGTGGTAAACGACATAGCTGGATCAAGCAAAAGATTCCTGAATTATACAGTGGAACAATTGTGAATGTGATGATTGGACTGGATTTAATATGCCGAGTCTGCAAGTGTACTATCTGCGAAGTTGGAACAATATATACACATCATCAGAAAACTGTTATTGTGGATGCTGATGCTGGAAGTAATAGAAGAAAAGTGATAGCATTTGTTGGTGGACTTGATTTGTGTGACGGGCGATATGATACTCCCCACCACCCTATTTTTAGATCATTGAATACAGATCATAAGGATGACTACCACAACCCCACTTTCACGGGTAATGTTGGTGGTTGTCCTCGGGAGCCATGGCACGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTCGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCACGGGATTAAAAAGTTGACTACTTCATACGATGATGCTTTGCTAAGGTTGGAAAGAATTCCAGATTTTATTGGCATCAATGATGCTCCAAGTGTTGGTGAAGATGATCCTGAAGTTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCGGTTAAGAGATTTCCGAAGGATCCAAAAAATGCAACAAGCAAGGTGAATGAGAAGCCTTGTGCTGATAACTTAATCCCAATGGAAATTGCTCTAAAGATTACTGAAAAGATAAAAGCACATGAAAGATTTGCAGTGTATATTGTTATTCCCATGTGGCCGGAAGGAGTTCCAACAGGGGCTGCAACGCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACCATTTACAAGGCTTTGGTTGAAGCAGGGCTTGAAGCAGCATTTTCTCCACAAGATTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCATCAGTATGTATGATAATGTTGGTGTGACAGGATCTCCTCCCCCAGCAAATAGTCCTCAATTGGCTAGCCGAAATAGCCGACGTTTCATGATTTATGTTCACTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAGCGCTCCATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGTGCCTATCAACCTCATTATACATGGGCAAAAGCACAAACTTATCCACACGGTCAAATCCATGGATATAGGATGTCCCTTTGGGCAGAACATACAGGAACAATTGAGGACTGCTTCTTGCAACCTGAGAGTCTTGAATGTGTAAGTAGGATTAGAGCAATGGGAGAAATGAACTGGAAACAATTTGCAGCAGATGAAGTAACAGAGATGAGAGGGCATCTACTGAAATACCCTGTAGAAGTTGATAGAAAGGGCAAGGTTAGATCACTTCCAGACCAAGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3258 0.4248 MDNYGSSSPYRYPSPYGYPSNPHQPYPPPPVSAPDPYAQAPYPSYPYLSSHSFNYSHHGPPRPSSHSGHFEYSYPPNAMDFSHPPPPSYAPPPTYPYPYHVPPPNHGSPGPPPFHQPSYQYGSPQYYYPPKESYSPPPDIHSGTNSFSSPYWQDNTSTAEGGKVSQSSDNSISMHSQGSSYPALDDLMSNVRLSDGQPTAPASPPAPAGHPLMHSISVPKLQQKKEEEFYGYSNNSFSGWGSSYPTRMNSSSLSDFSGSFNESVYGERLQIVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDVFGKLPGGVSNKIEGTMNKKITSDPYVSILVSNAVIGRTYVISNSENPVWWQHFYVPVAHHAAEVHFLVKDSDIVGSQLIGIVAIPVERIYSGETVEGFFPILNSNGKPCKQDAVLRLSIQYIPMEKMSIYHKGIGAGPEYVGVPGTYFPLRKGGTVTLYQDAHVPDGSLPNVLLDSGMYYAHGKCWQDIFDAISQARRLIYITGWSVWHKVRLIRNAAGYSPDYTLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRSGKRHSWIKQKIPELYSGTIVNVMIGLDLICRVCKCTICEVGTIYTHHQKTVIVDADAGSNRRKVIAFVGGLDLCDGRYDTPHHPIFRSLNTDHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLTTSYDDALLRLERIPDFIGINDAPSVGEDDPEVWHVQIFRSIDSNSVKRFPKDPKNATSKVNEKPCADNLIPMEIALKITEKIKAHERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAISMYDNVGVTGSPPPANSPQLASRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHYTWAKAQTYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVSRIRAMGEMNWKQFAADEVTEMRGHLLKYPVEVDRKGKVRSLPDQEEFPDVGGKIVGSFLAMKENLTI 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01237 1085 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g01237 1085 MobiDBLite consensus disorder prediction 138 184 - -
Vimu6g01237 1085 ProSiteProfiles C2 domain profile. 265 411 IPR000008 -
Vimu6g01237 1085 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 640 675 IPR001736 GO:0003824
Vimu6g01237 1085 MobiDBLite consensus disorder prediction 15 37 - -
Vimu6g01237 1085 MobiDBLite consensus disorder prediction 79 118 - -
Vimu6g01237 1085 SMART C2_3c 288 410 IPR000008 -
Vimu6g01237 1085 Pfam Phospholipase D C terminal 1005 1075 IPR024632 -
Vimu6g01237 1085 Pfam C2 domain 287 413 IPR000008 -
Vimu6g01237 1085 SUPERFAMILY Phospholipase D/nuclease 497 740 - -
Vimu6g01237 1085 MobiDBLite consensus disorder prediction 56 213 - -
Vimu6g01237 1085 Gene3D C2 domain 282 427 IPR035892 -
Vimu6g01237 1085 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 931 958 IPR001736 GO:0003824
Vimu6g01237 1085 Gene3D Endonuclease Chain A 797 985 - -
Vimu6g01237 1085 Gene3D Endonuclease Chain A 488 755 - -
Vimu6g01237 1085 SMART pld_4 931 958 IPR001736 GO:0003824
Vimu6g01237 1085 SMART pld_4 640 675 IPR001736 GO:0003824
Vimu6g01237 1085 Pfam Phospholipase D Active site motif 641 675 IPR001736 GO:0003824
Vimu6g01237 1085 Pfam Phospholipase D Active site motif 932 958 IPR001736 GO:0003824
Vimu6g01237 1085 FunFam Phospholipase D delta 282 429 - -
Vimu6g01237 1085 CDD C2_plant_PLD 282 434 - -
Vimu6g01237 1085 PANTHER PHOSPHOLIPASE D 277 807 IPR015679 -
Vimu6g01237 1085 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 285 436 IPR035892 -
Vimu6g01237 1085 SUPERFAMILY Phospholipase D/nuclease 821 1017 - -
Vimu6g01237 1085 FunFam Phospholipase D delta 488 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01237 Vimu-Chr6 12456731 12464410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01237 65 1085 Phospholipase D Gene Family (Wang group) AT2G42010 62.831 0.0 1324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01237 K01115 - gmx:100791059 1699.49