Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01235 ATGGTCGCCGGCATTGACATGTCACTCGACGACATTATGAGGTACTCCGCCAAGGTGGCGGCGTCTCGCCGGCGATACTCGTTTGTTCGCAACCCGGTCAGAACGACGCCGTATCCCGTTCCGCTGGCAAGGTATCACGGAATGATTCCAGAAATGGTTTTTGAAGATGACGGTGCCGCTATGATCGAAAGAGGAACCAAACTCTTGATATCTAACTTGGATCTTGGAGTTTCAAACGGTGATATAAAGCTGCTGTTTTCGGAAGAGGGTGAATTGAAAAGATGCTCCATTCATTATGATCAGAACGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTTATGAGACACTCTGATGCTTTATCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAACCTTTGGAAATTGAGCTCGTTGGAACTAGTAGTCCTGTTGTTGCCTCTCTTCGTCAAAATAACTTACTGGGAAGACCAAGTGATTCACTTCTAAGCAAAGGAGAAAGAGTTGGAGGTAGGGGGTTTCACAATGACTTTGTACAGGGCTACATTCCAAGGGTCCGTGGAGAAGAGAAGGGATATATTCGAGAGTTATATTTAACAGATGTGGATGATGCTTTGGAGAGGCCACACCGCGTTCCGAGATGCCACGCAAAAGTAAAGAGCAATAATAGAAAAGTGACTGCTAAAGATCTTGATGATGATTTGGAGAGGTATCACCTAGAGGCTAAGCGGATAAAAGAACAAAATGGAAAGTCAGATAATCATTGA 774 0.4444 MVAGIDMSLDDIMRYSAKVAASRRRYSFVRNPVRTTPYPVPLARYHGMIPEMVFEDDGAAMIERGTKLLISNLDLGVSNGDIKLLFSEEGELKRCSIHYDQNGRSKGTAEVVFMRHSDALSAIKKYNNMRLDGKPLEIELVGTSSPVVASLRQNNLLGRPSDSLLSKGERVGGRGFHNDFVQGYIPRVRGEEKGYIRELYLTDVDDALERPHRVPRCHAKVKSNNRKVTAKDLDDDLERYHLEAKRIKEQNGKSDNH 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01235 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 136 IPR000504 GO:0003723
Vimu6g01235 257 CDD RRM_THOC4 66 140 - -
Vimu6g01235 257 Gene3D - 55 195 IPR012677 -
Vimu6g01235 257 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 61 244 - -
Vimu6g01235 257 SUPERFAMILY RNA-binding domain, RBD 62 145 IPR035979 GO:0003676
Vimu6g01235 257 Coils Coil 230 250 - -
Vimu6g01235 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 143 IPR000504 GO:0003723
Vimu6g01235 257 SMART rrm1_1 67 139 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01235 65 141 Eukaryotic Initiation Factors Gene Family AT2G23350 33.766 7.16e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01235 K12881 - gmx:100785926 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01235 6 12432420 12434195 Vimu6g01235 6 12432420 12434195 ECH