Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01230 ATGGTGAACGTGATGGAGTGGCAGAAGCAGAGTTGGCAACCCAACGGTAACGCCGAAATGATGTACGTCAAAGTCATGACCGACGAACAACTCGAGACTCTCCGCAAGCAGATTGCGGTGTACGCAACAATCTGTGAGCAACTCATCGAGATGCACAAAACCATCTCTTCTCACCAAGATCTCGCAGGAATTAGACTGGGAAACATGTACTGCGATCCTTTGTTGGGGTCTAGTGGGCACAAAATAGCTTCGAGGCAGAGGTGGACTCCGACTGCTATGCAGCTTCAGATTCTGGAGCGGATATTTGATCAGGGAACTGGGACTCCCAGCAAGGAAAAGATCAAGGAGATCACTGCTGAGCTCAGCCAGCATGGCCAGATTTCTGAGACCAATGTTTATAACTGGTTTCAGAACAGGCGGGCTCGCTCCAAAAGAAAGCAACAGAATGTGGCACCCGGTGTTAATGCGGAATCGGAAGTAGAGACCGAGGTTGATTCCAAAGATAAGAAGACAAAGGCAGACGATTTTTGGTCCCAGCTCAATGTTTCTGCTGGGCCTTCTGATAATTTAGGTTTCCAGAACCATGATGATCTGCCGTACTTGAATGAGAATTCAGAGTCCAACAAACCAGATTCTGTTTTCCCGTCTGATGGGAGTTTAAGATCCACTAGAAATTTCAACCATGTGCCTGTTTTCGATGGGCTGCTATCATCGAACCCCGGGAATGGCTATCTTACTGGAAAAATAGAAGCTCCTGAGAACTACGACTTATACCAGCCATCAGACGACTTCGACATGGCAGGCTGA 807 0.4783 MVNVMEWQKQSWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKTISSHQDLAGIRLGNMYCDPLLGSSGHKIASRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQNVAPGVNAESEVETEVDSKDKKTKADDFWSQLNVSAGPSDNLGFQNHDDLPYLNENSESNKPDSVFPSDGSLRSTRNFNHVPVFDGLLSSNPGNGYLTGKIEAPENYDLYQPSDDFDMAG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01230 268 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Vimu6g01230 268 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 266 IPR044559 GO:0003700
Vimu6g01230 268 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Vimu6g01230 268 MobiDBLite consensus disorder prediction 143 172 - -
Vimu6g01230 268 CDD homeodomain 85 147 IPR001356 GO:0003677
Vimu6g01230 268 SMART HOX_1 83 150 IPR001356 GO:0003677
Vimu6g01230 268 Gene3D - 86 151 - -
Vimu6g01230 268 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01230 Vimu-Chr6 12407363 12409986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01230 21 268 Wox Gene Family AT4G35550 53.200 3.87e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu6g01230 Homeodomain 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01230 - - gmx:100784355 466.463