Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01227 ATGGCTGAAGAAAATGTGGGATATGAAAATTCTTCCAGAATTGAACCCAAACGTAGTCATCAGTGGTTTATGGATACAGGTGAACCTGAAATATTCAGCAACAAGAAACAGGCTGTTGAAGATGTCAGTGGTAGGCCAATTTCAGGAGTTTCACACGTGAATGTTTCCCAATGGGACACCAATTCAGGATTTCACTGTGTCACGGGTCAATTTTCTGACCGTCTTTTTGGATCTGATCTTGCTAGGACAGTGAATTTGGTTGATAAGAATGTGCCATCTATTGTAAGTGGAAATATAAACATGGGAAGGAAGGAATTTGAGCATCAATATGGTAATGATCCTTCAGTGGGATTGTCAATATCTCATTCCATTGCGGACCCTTCATCATGTCTCAATTTTGGTGGCATCAGAAAAGTTAAAGTTAATCAAGTTAGAGATTCTGACAATTGCATGCCTTCTGCATCCATGGGGCACTCCTATAGCAGGGAAGATGATAGTACAATTTCAGTAGGTGCTGGCTACAGTAAGAATGATGGCAGTATTTCGTTGGGTCCTACTTATAACAATAGAAGTGACAACACCATTGGTATGGGGACCAGAATAAGTAGCAAGACTGATGACAATCTTCTTTCAGTGGCTCACAACTTCAATAAAGGGGATGGGGGTTTCATGCTGATGGGCCACAATTATGGAAAGGGAGATGATAGTATCTTATCAATGGGTCAGCCCTTTGACAAGGGAGATGGAAATTTCATATCAATGGGTCAATCATATGAGAAAGAAGATGGGAATCTAATATCTCTGGGCACCTCATATTCCAAGGGGCATGAGGGTTTTATATCAATTGGTCCAACCTATGGTAAATCAGGAGAGAATTTCATTACTGTTGCTCCTTATGACAAGGGTACTGATCATTTAATATCAATGGGTTCAACATATGATAAGGTGGATTCAAATATTGCATCAACAGTTCCATCATATGACAGAGGAGATTCCAGTTCTTTACCTGTGGGTCAAAATCACCATAAGGGTCAGAGCGGTACCATATCCTTTGGAGGTTTTCATGATGACCCTGAAGCAAATCCCTCTGGTGGAATAATTAGTGGCTATGATCTGTTGATAGGAAACCAAAACTCAGCTCAAGGTTTGGATGGTCAGAATGATCTGACTGAAACAAACACTGAATCACTTGTAAATAGCATTCCAAAACTTAATACTAAAAATGATATTGTTGTTAAGAACAAAGAGCCTAAGACAACAACCAAGAAGGCTCCTACGAACAACTTCCCTTCAAATGTCAAAAGTTTGCTGTCAACCGGTATTTTTGACGGTGTCCAGGTGAAATATGTTTCATGGTCACGGGAGTTTCAAGAATATGCTTGGCAGAAAAGTCTTAAAGGAATCATAAAAGGAACTGGGTATTTGTGTTCATGTGATGACTGCAAGCAGTCAAAGGTTGGCATTTCAAATACTTACATTCTGATAATCTGCATAACCGAAGTGATTGTACTCATGTTAACTTTTATCGTGAAGGCTCTTAATGCATATGAGTTTGAGCGTCATGCTGGTGCCAAGACAAAACACCCCAATAATCACATATACTTCGAGAATGGAAAAACCATCTATGCTGTTGTTCAAGAACTGAAAAATACTCCTCAGGAGATGCTTTTTGATGCAATTCAAAATGTGACTGGCTCTACCATCAACCAAAAGAACTTTCGAGGATGGAAAGCATCATACCAAGCTGCTACTCGGGAGCTTCAACGTATTTATGGAAAGGATGAAGTGATAATTCCATCTTGA 1803 0.3966 MAEENVGYENSSRIEPKRSHQWFMDTGEPEIFSNKKQAVEDVSGRPISGVSHVNVSQWDTNSGFHCVTGQFSDRLFGSDLARTVNLVDKNVPSIVSGNINMGRKEFEHQYGNDPSVGLSISHSIADPSSCLNFGGIRKVKVNQVRDSDNCMPSASMGHSYSREDDSTISVGAGYSKNDGSISLGPTYNNRSDNTIGMGTRISSKTDDNLLSVAHNFNKGDGGFMLMGHNYGKGDDSILSMGQPFDKGDGNFISMGQSYEKEDGNLISLGTSYSKGHEGFISIGPTYGKSGENFITVAPYDKGTDHLISMGSTYDKVDSNIASTVPSYDRGDSSSLPVGQNHHKGQSGTISFGGFHDDPEANPSGGIISGYDLLIGNQNSAQGLDGQNDLTETNTESLVNSIPKLNTKNDIVVKNKEPKTTTKKAPTNNFPSNVKSLLSTGIFDGVQVKYVSWSREFQEYAWQKSLKGIIKGTGYLCSCDDCKQSKVGISNTYILIICITEVIVLMLTFIVKALNAYEFERHAGAKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQNVTGSTINQKNFRGWKASYQAATRELQRIYGKDEVIIPS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01227 600 PANTHER AUTOIMMUNE REGULATOR 3 545 - -
Vimu6g01227 600 Pfam Tify domain binding domain 467 548 IPR032308 -
Vimu6g01227 600 SUPERFAMILY Porins 160 334 - -
Vimu6g01227 600 MobiDBLite consensus disorder prediction 326 360 - -
Vimu6g01227 600 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01227 Vimu-Chr6 12381363 12383385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01227 422 581 PHD Transcription Factor Family AT3G53680 45.000 3.12e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01227 - - gmx:100782217 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01227 6 12381363 12383385 Vimu6g01227 6 12381363 12383385 ECH
Vimu3g01380 3 25964851 25967489 Vimu6g01227 6 12381363 12383385 ECH