Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01225 ATGAGCAACCGTGTGTTTGAGTGCAAGACATGCAATAGGCAGTTTCCTTCGTTTCAAGCACTTGGTGGGCATAGGGCCAGTCACAAGAAACCTAGGTTGATGCCAGATTCGCCCCCAAAGCCTAAGACTCACGAGTGCTCGATTTGTGGATTGGAGTTTGCTATAGGCCAAGCTTTGGGAGGTCACATGAGGAGACACAGAGCTGCAAATTTGAACGGAAACCTGCATAATTCCACCACTGTCAGCAGTAGCAGTGGTGGTAGCAGCAGCATCGATTCTTCAACCAAGAACAAAGTTCCCAACAAGAGATTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATAGGAAAACCAACTGCTTTGGTTGATTATTTGTATTAG 405 0.4444 MSNRVFECKTCNRQFPSFQALGGHRASHKKPRLMPDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNLHNSTTVSSSSGGSSSIDSSTKNKVPNKRFLVLDLNLTPFENDLEILKIGKPTALVDYLY 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01225 134 MobiDBLite consensus disorder prediction 72 96 - -
Vimu6g01225 134 Gene3D Classic Zinc Finger 4 66 - -
Vimu6g01225 134 SUPERFAMILY beta-beta-alpha zinc fingers 4 66 IPR036236 -
Vimu6g01225 134 SMART c2h2final6 6 28 IPR013087 -
Vimu6g01225 134 SMART c2h2final6 44 66 IPR013087 -
Vimu6g01225 134 PANTHER ZINC FINGER PROTEIN ZAT5 2 116 - -
Vimu6g01225 134 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Vimu6g01225 134 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vimu6g01225 134 Pfam C2H2-type zinc finger 44 68 - -
Vimu6g01225 134 Pfam C2H2-type zinc finger 5 31 - -
Vimu6g01225 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vimu6g01225 134 MobiDBLite consensus disorder prediction 22 41 - -
Vimu6g01225 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01225 Vimu-Chr6 12371004 12371438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01225 3 125 C2H2 Transcription Factor Family AT2G28710 48.889 5.02e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g01225 zf-C2H2_6 5.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01225 - - gmx:100781134 223.787