Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01223 ATGGCAATGTATAGAATTGCAATTGGGTCCCCTGCAGAGGCTGCCCAACCTGATGCAATTAGAGCAGCATTTGCAGAATTTTTCTCCATGATCATCTTTGTTTTTGTTGGAGAAGGATCTGGCATGGCTTACAGCAAGCTTACCGACAATGGACCTGCAACACCTACTGGTCTAATACTTGCATCACTGTCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAGTCCATTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTTATAGGAGGAAACATAACCCTGCTGAGAAGTATTCTGTATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCATGCATTCTTCTGAAATCTGCAACTGGTGGAATGGAAACATCAGGCTTTTCTCTATCCCCTGGTGTGTCTGTGTGGAATGCATTGATTTTTGAAGTTGTGATGACTTTTGGTTTGGTATACACAGTTTATGCAACAGCAGTGGATCCAAAGAAAGGGAATGTGGGAATTGTTGCCCCTATTGCAATTGGTTTGATTGTGGGTGCCAATATCTTAGTTGGTGGGGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTACCTGGCAATGGACTCATCACTGGGTCTATTGGGCTGGACCATTCATTGGTGCAGCCATTGCTGCAATTATATATGATAACATCTTCATTGGTGATGATGGTCATGAACCTCTTTCAAGCAGTGACTTCTAG 759 0.4453 MAMYRIAIGSPAEAAQPDAIRAAFAEFFSMIIFVFVGEGSGMAYSKLTDNGPATPTGLILASLSHAFGLFVAVSVGAVHSGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSGFSLSPGVSVWNALIFEVVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGLIVGANILVGGAFDGASMNPAVSFGPAVVTWQWTHHWVYWAGPFIGAAIAAIIYDNIFIGDDGHEPLSSSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01223 252 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 SUPERFAMILY Aquaporin-like 15 240 IPR023271 -
Vimu6g01223 252 FunFam Probable aquaporin TIP1-1 4 251 - -
Vimu6g01223 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu6g01223 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Vimu6g01223 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vimu6g01223 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01223 Vimu-Chr6 12343367 12345096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01223 1 252 Major Intrinsic Protein MIP AT4G01470 81.746 7.10e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01223 K09873 - gmx:100788583 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01223 6 12343367 12345096 Vimu6g01223 6 12343367 12345096 ECH