Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01222 ATGATGATATCAAGAGGATTGTTCGGATGGTCCCCGCCGCACGTGCAACCGCTCACGCCGGTTTCGGAGGTTTCGGAGCCGCCGGAGTCTCCGTCGCCGTACCTGGACCCCGGCGCCGAGACCTCTGCCTCACAGCAGGTGGAGTTGGAGGAGGAAATGGAGGAGCCGGAGGAGATCGAACCGCCGCCCGGGGCGGTTCCGTTTTCGCAGCTCTTCGCATGCGCCGACCGCTTCGATTGGTTCCTCATGACCGTCGGCTCCCTAGCCGCCGCGGCTCATGGCACCGCGCTCGTCGTTTACTTGCACTATTTCGCGAAGATCATCCACGTGCTGCGGATGGATCCTGAGCTCGGCCCGTCACACGAGCAGTTTAATAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGCGGGAGTTTTTGTTGCTGGTTGGATTGAGGTTTCGTGTTGGATCTTGACGGGAGAACGACAGACTGCTGTCATCAGGTCAAATTATGTTCAAGTACTGCTTAATCAAGATATGAGCTTTTTTGATACTTATGGGAACAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGTTGCTTATCCAGTCTGCTCTTAGTGAAAAAATTGCTCTGTTAACGTTAGGAACGGGTCCATTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTCCATAGGCTAGCAGAGAACATCCAAGATGCATATGCTGAAGCAGCTGGCATTGCTGAACAGAATACCAAAGAGGCACCTTTAATATCTTATGATACTGAAATGACTGCTCTCTCATTTCTGACTGCGATGGAGACTAGATCATCTTTACCCCATCTAATGGGAAGAGAAATTGACGCAGTTTCCTATGTAAGGACATTGTATGCATTTACAAATGAAACTTTGGCTAAGTATTCATATGCAACATCATTGCAAGCTACTCTTAGATATGGTATATTAATTAGTCTTGTTCAAGGTCTTGGTCTTGGATTTACATATGGTCTAGCAATATGTTCTTGTGCGTTACAACTCTGGGTTGGAAGATTCTTGATCATTCACGGAAAAGCGCATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCGGCTACAAATTTCTACTCATTTGACCAGGGACGAATAGCTGCTTATAGATTGTTTGAGATGATAAGTCGATCACCCTCATCTGTTAATCATGATGGCACTGCCCCGGATTCAGTGCAAGGAAATATTGAATTTCGGAATGTTTATTTCAGCTATCTGTCCCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTGCCTGCTAAGAAAGCGGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATAAAGAATTTGAAACTGGAATGGTTGAGGAGCCAAATAGGATTGGTCACCCAGGAGCCTGCTTTACTCAGTTTGAGTATAAGAGACAATATTGCTTATGGTAGGGATGCTTCCATGGATCAAATTGAAGAGGCAGCTAAAATAGCTCAAGCACATACGTTTATCAGCTCATTAGAGAAATGTTATGACACACAGGTTGGCAGGGCAGGTCTGGCTCTGACCGAAGAGCAAAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGACGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGGGGCTCTGAATTTGCTTATGTTGGGACGCTCTACAATAATAATTGCTCGCAGGCTTAGTCTCATAAGGAATGCTGACTACATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACCCTGGGTGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCAACCAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTGCGGGCTTCCAAATTGAAAAAGATTCTTCAAGTCATAGCTTAAAAGAACCATCATCCCCTAAAATGACGAAGTCACCGTCTCTTCAAAGAATGTCCAATGTATCCCGACTTTCAGATGGCGCCTTTAACTTGCACGAATCACCAAAAGCCTGGAGCCCACCACCTGAGCACCTGATGGAAAATGGACAGCTATTGGATGTAGCTGATAGGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTTCCCCAACTACCAAAGATTGATGTTCAGACTCTGCAGAGACAAAAGTCAAATGAATCTGATCCTGAATCTCCAGTTTCACCTCTTTTAACATCTGATCCTAAAAGTGAACGCTCCCATTCACAGACCTTTAGTAGACCACATAGTCATTCTGATGATGTTTCAGTTAAATTGAGAGAAACAAAGGGTGTGCGACACCAAAAGCCCCCATCACTGCGGAAGCTGGCTGAGCTTAGTTTTACTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCAATCTTTGGCTCTTTCAATCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACACCCATCACCTGGAACGGGAAGTAGACAAGTGGTGCTTGATCATTGCTTGCATGGGTATTGTGACGGTAGTTGCCAACTTTTTACAGCATTTCTACTTCGGTATTATGGGTGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTTGGATGGTTTGATGGTGAGGAGAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGGCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTCTTATTGGGGCTTTGCTGCATTGGCGATTAGCACTAGTGGCTTTTGCAACCCTTCCAGTTCTCTGTGTTTCTGCCATTGCCCAGAAATTTTGGCTTGCTGGATTTTCAAGAGGTATCCAGGAAATGCACAGAAAGGCATCTTTGGTCCTCGAAGATGCAGTTAGGAACATTTACACCGTGGTTGCTTTCTGTGCTGGTAACAAGGTAATGGAGCTCTATAGGCTGCAATTGAAGAAAATATTTAAGCAGAGCTTTCTACATGGGATGGCAATTGGTTTTGCATTTGGTTTTTCACAATTTCTACTTTTTGCTTGTAATGCCCTGCTACTTTGGTACACTGCCATATGTATAAAGCGAGGCTACATGGATCCACCGACTGCCCTCAAAGAGTACATGGTTTTCTCATTTGCAACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTAAAACGACGAAAATCCCTCATATCAGTGTTTGAAATTATAGACCGTGTTCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTCTCAGGATCAGGAAAGAGCACTATAATATCTTTGCTTGAGAGATTTTATGATCCAGTTGCAGGCCAAGTTTTCCTGGATGGTAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTTGTTCAGCAGGAACCTATTATCTTTTCAACAACCATAAGGGAAAACATTTTATACGCAAGGCATAATGCCACTGAAGCAGAGATGAAAGAGGCTGCAAGAATAGCAAATGCCCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCATGTAGGGATGAGAGGCGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAAGCCAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACTACCATTTTAATAGCACACAGGGCAGCAATGATGAGGCATGTAGACAATATTGTAGTGCTTAATGGCGGACGGATAGTGGAGGAAGGCAGTCATGATTCATTGGTTGCAAAGAACGGTTTGTATGTCCGCTTGATGCAACCTCATTTTGTTTCACTTTCTTCTCGAGTTGAATCATTGGTGGCTTCTGCACCTGAAGGGTTTTCCCAAGAACGTCAGGTGGAAAGTGTGGGTGGGAATGCGAATGGCATCAATAGGCATAGGAAGTGA 4338 0.4385 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVELEEEMEEPEEIEPPPGAVPFSQLFACADRFDWFLMTVGSLAAAAHGTALVVYLHYFAKIIHVLRMDPELGPSHEQFNRFTELALTIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKIALLTLGTGPFIVAAGGISNIFLHRLAENIQDAYAEAAGIAEQNTKEAPLISYDTEMTALSFLTAMETRSSLPHLMGREIDAVSYVRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLIIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSPSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDASMDQIEEAAKIAQAHTFISSLEKCYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQGALNLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLGGLYAELLRCEEATKLPKRMPVRNYKETAGFQIEKDSSSHSLKEPSSPKMTKSPSLQRMSNVSRLSDGAFNLHESPKAWSPPPEHLMENGQLLDVADREPSIRRQDSFEMRLPQLPKIDVQTLQRQKSNESDPESPVSPLLTSDPKSERSHSQTFSRPHSHSDDVSVKLRETKGVRHQKPPSLRKLAELSFTEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTHHLEREVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDGEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPVLCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLLERFYDPVAGQVFLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENILYARHNATEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFVSLSSRVESLVASAPEGFSQERQVESVGGNANGINRHRK 1445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01222 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 85 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01222 1445 SMART AAA_5 448 633 IPR003593 GO:0016887
Vimu6g01222 1445 SMART AAA_5 1194 1381 IPR003593 GO:0016887
Vimu6g01222 1445 FunFam ABC transporter B family member 20 1157 1406 - -
Vimu6g01222 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1167 1404 IPR003439 GO:0005524
Vimu6g01222 1445 MobiDBLite consensus disorder prediction 754 822 - -
Vimu6g01222 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 655 IPR027417 -
Vimu6g01222 1445 FunFam ABC transporter B family member 6 1014 1164 - -
Vimu6g01222 1445 Pfam ABC transporter 1185 1333 IPR003439 GO:0005524
Vimu6g01222 1445 PANTHER ABC TRANSPORTER B FAMILY 48 657 IPR039421 -
Vimu6g01222 1445 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 396 - -
Vimu6g01222 1445 MobiDBLite consensus disorder prediction 689 704 - -
Vimu6g01222 1445 Pfam ABC transporter transmembrane region 85 211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01222 1445 Pfam ABC transporter transmembrane region 849 1113 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01222 1445 Gene3D ABC transporter type 1, transmembrane domain 815 1155 IPR036640 GO:0005524|GO:0016020
Vimu6g01222 1445 Gene3D ABC transporter type 1, transmembrane domain 64 210 IPR036640 GO:0005524|GO:0016020
Vimu6g01222 1445 SUPERFAMILY ABC transporter transmembrane region 71 251 IPR036640 GO:0005524|GO:0016020
Vimu6g01222 1445 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 844 1136 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu6g01222 1445 SUPERFAMILY ABC transporter transmembrane region 826 1152 IPR036640 GO:0005524|GO:0016020
Vimu6g01222 1445 SUPERFAMILY ABC transporter transmembrane region 274 402 IPR036640 GO:0005524|GO:0016020
Vimu6g01222 1445 MobiDBLite consensus disorder prediction 676 704 - -
Vimu6g01222 1445 MobiDBLite consensus disorder prediction 13 61 - -
Vimu6g01222 1445 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 421 656 IPR003439 GO:0005524
Vimu6g01222 1445 FunFam ABC transporter B family member 6 784 1012 - -
Vimu6g01222 1445 Gene3D - 411 658 IPR027417 -
Vimu6g01222 1445 FunFam ABC transporter B family member 20 411 658 - -
Vimu6g01222 1445 CDD ABC_6TM_Pgp_ABCB1_D2_like 839 1150 - -
Vimu6g01222 1445 Pfam ABC transporter 442 586 IPR003439 GO:0005524
Vimu6g01222 1445 Gene3D ABC transporter type 1, transmembrane domain 288 667 IPR036640 GO:0005524|GO:0016020
Vimu6g01222 1445 MobiDBLite consensus disorder prediction 765 795 - -
Vimu6g01222 1445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1156 1404 IPR027417 -
Vimu6g01222 1445 Gene3D - 1157 1408 IPR027417 -
Vimu6g01222 1445 MobiDBLite consensus disorder prediction 796 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01222 Vimu-Chr6 12330910 12339552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01222 53 713 Calmodulin-binding Proteins AT2G36910 39.080 9.34e-141 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01222 K05658 - gmx:100779000 2455.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01222 6 12330910 12339552 Vimu6g01222 6 12330910 12339552 ECH