Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01220 ATGGCTCTTCCAAGACCAAGTACTGAAGAGAAAGCCCTTTCTCAGCTCAAAGAAGGAACATCATCATCAGCAGCACCACCTTCTTCATCTTCTTCATGGAATAATAGGCTTCACACTTTCTCTCCTTTGAATCTACACCACAAGACTAGCAAAATTGTATTATTGACTGATTCAGAAGACAGTGATGAAGATATGTTCACAGTTCCAGATGTGGAGACCACACCCATTAATGTTCATTCTCAACCAAACAGTAACCTTAAACAATCTAACGTGACAGAACCTCAGTTTCAAACTGGTTTCCCTGGAAAGCGTCGCAGGGGAAGAAACCCTGCGGATAAGGAACATAGACGTCTCAAGAGGGTTTCTGCTCAACAAGCCCGAGAAAGAAAGAAGGTTTATGTGAATGATTTGGAAGCAAGAGCCAAAGAGTTACAAGATAAAAATGCTATCTTAGAAGAACGTATCTCTACTTTGATCAATGAGAACACCATGCTTAGGAAGGTTCTTATGAATGCGAGGCCAAAAGTTGATGATAGCAATGAACAAAAGCAAGAGCAGTTAAGTAAGAGCTAA 573 0.4066 MALPRPSTEEKALSQLKEGTSSSAAPPSSSSSWNNRLHTFSPLNLHHKTSKIVLLTDSEDSDEDMFTVPDVETTPINVHSQPNSNLKQSNVTEPQFQTGFPGKRRRGRNPADKEHRRLKRVSAQQARERKKVYVNDLEARAKELQDKNAILEERISTLINENTMLRKVLMNARPKVDDSNEQKQEQLSKS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01220 190 SUPERFAMILY Leucine zipper domain 119 170 IPR046347 GO:0003700|GO:0006355
Vimu6g01220 190 MobiDBLite consensus disorder prediction 1 42 - -
Vimu6g01220 190 Gene3D Single helix bin 130 171 - -
Vimu6g01220 190 Coils Coil 127 161 - -
Vimu6g01220 190 MobiDBLite consensus disorder prediction 74 127 - -
Vimu6g01220 190 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 20 185 IPR044280 GO:0000981|GO:0045944
Vimu6g01220 190 MobiDBLite consensus disorder prediction 74 97 - -
Vimu6g01220 190 CDD bZIP_HY5-like 113 162 - -
Vimu6g01220 190 Pfam bZIP transcription factor 114 167 IPR004827 GO:0003700|GO:0006355
Vimu6g01220 190 SMART brlzneu 109 171 IPR004827 GO:0003700|GO:0006355
Vimu6g01220 190 MobiDBLite consensus disorder prediction 13 42 - -
Vimu6g01220 190 FunFam Transcription factor HY5 130 171 - -
Vimu6g01220 190 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 109 172 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01220 Vimu-Chr6 12317903 12323301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01220 95 179 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 69.231 4.46e-35 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g01220 bZIP_1 6.5e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01220 K16241 - gmx:778143 288.5