Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01219 ATGGTGGGGAACGACGACGCGGGTCACCTCTCCGCCTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCATCTTCCCGGACCGCCGCCGGGAACGCCTCTTCCGGCGAGGGGGGTAAGGGTTTCGCGGATTCTGGCAGCGCAGAAGGTCCTCACAGAGAGAACCGGCGGTTCCCTCCGCCGCCACTTACGCCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCTTGCTTGCCGCCGCTGCAGCCGCTGTCTATCGCTCGGCGGAGTCTTGATGAGTGGCCGAAGGCGGGCTCCGATGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCGGGAGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAGCAACCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGACAAAGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATGGTATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAATACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCCGAGGACATTACTAGTATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAACAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCTACATCTCTGGTGATTGCTTACCTTATGTGGAGGGAGGGACAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCTGCAAGAGGGATTGCTGATCCGAATATGGGGTTCGCTTGCCAGTTGTTGCAGTGTCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGCTCTTTGCTGAGGATTTACAGGATTGCTCCACACTCCCCGTATGATCCTTTACATCTTGTTCCCAAAATGTTGATGGATCCTTCGGCAGCTGCACTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCGGCAATATATGTTTGGATTGGTAAGAACTGTGAGGCCATCATGGAGAGGGACGCCAGAGGGGCTGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGACCAATTGTGATGATTAAGGAAGGCGAGGAACCAGCTTACTTCTGGGATGCTTTTTCGAATTTTCTGCCTTTGATGGATAAATCTGGCAATAGAGTAGAAGATGGAAACTTGACTAGTAAAGTTTCTCCTGGTGAGAGGAGAGTGGAAGCATATGATGTTGATTATGAAGTTTTCAAAAAAGCAATCACAGGAGGATTTGTGCCTCCCTTTGCGTCATCGGAGAATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGCTCTAAGGCGTAAAGTTGCCTCTGCTAATACGAAGGAGTTTGTTTCTACCCCTAGGTTATCCTTTCCCAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAACTTGTCTCCATCTTCATCCCTTTCATCATCGTCATCGTCTATATCATCATCCTCTTCACCGTCTTATGTTTCTCCAGATTCCATTTCTTCTGATTCTAGTACTCATTCTAAGTTTTTGTCAGAAGTGTCCCCAGATTCTTCCTCTGTGGTTTTTACTCCTATTCCCGTACCTTCTTCTTTGTCCAGTTTTTCTAATTTGTCAATCTCTTCAAATTCTACTTCTAAAGCAGTTTCTAACAGTACAGATATCCTTGGTGTTAAGTTATCACATCCCTGGTCTCAGTCTGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGCAGAGGTAGTCTGTCAAAATCTTTGAAGTTGCCACTGAAGAATGATAAGAAACAAGTAATGGATAAGCCACCTACCTTTCATAATAGTCAAGAATATGACATTATTGTTAATGGCAATGTTAGCTATTTGCAACAATCAGAAAGTAAAGATGATTTTTGTGAGTCTAACAAGCATGCCAAGGAGGGAGTTGTGAATTCATTTCAAAAGTGTGAGCTGGCACTATGTCCAAGCATTGTTGACAGCACGCACCTCAAGGAATCATCACTTGTTCGGAACTCTGTCGAGCCTTTGATAGATAGTTCCTCAGTAGAAGACGCAGTGCTTGGTCAGTCTGCAGCATTGAAGGGAACCAATGAGAGTGGCTTGGCGCAGTTTAATGTCGCACAGACTTCGGTATATCACTGGCCCAGTTTAGAAAAGGTTGAGACATTTGGTACAGATCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCCAGTATGCACTTAAACGCAGGGAACATGCTATATATTTGGGTAGGGAAGTCTTTCAATTGTGACGCTTCAAAGGTTCACTTGGATGTTGATATACAGTTAGATTGTTTAGGAGCTGTTGACTGGAATCAAATTGGTTGTGATCTCCTTGATCGGTTTAGTTTGCCGAAGAGTACAGTCATCAAGGCTCTAATTGATCTTCCCTGTGAAAAGAGATCCAGTGAGGAGGTTGTGAGAATTGTTGTGGTCAATGCTAAAAAGGCTGATCCCAAAGCTCAGGCCTTGAAGACGGCTAAGGCCGTCAAGTCTGGTGGCCAAGTCTTTAAGAAGAAAGCGAAAAAGATCAGGACATCTGTTACATTTCACCGGCCGAAGACATTGAAGAAGGACAGAAGCCCTAAATATCCTCGCATCAGTGCTCCGCCCAGAAACAAATTGGACCACTATCAGATACTTAAATTTCCTTTAACTACCGAATCTGCAATGAAGAAAATCGAGGATAACAATACACTGGTTTTTATTGTTGATCTCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGGCCAAGAAAGTAAACACATTAATCAGGCCAGACGGAACTAAGAAGGCCTATGTTCGGTTGACTCCAGATTATGATGCCTTGGATGTTGCCAACAAGATTGGTATAATCTAA 3030 0.4531 MVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASSGEGGKGFADSGSAEGPHRENRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHSNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSAAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRVEDGNLTSKVSPGERRVEAYDVDYEVFKKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANTKEFVSTPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSSISSSSSPSYVSPDSISSDSSTHSKFLSEVSPDSSSVVFTPIPVPSSLSSFSNLSISSNSTSKAVSNSTDILGVKLSHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLKNDKKQVMDKPPTFHNSQEYDIIVNGNVSYLQQSESKDDFCESNKHAKEGVVNSFQKCELALCPSIVDSTHLKESSLVRNSVEPLIDSSSVEDAVLGQSAALKGTNESGLAQFNVAQTSVYHWPSLEKVETFGTDHLDSKAAFVIFSPSMHLNAGNMLYIWVGKSFNCDASKVHLDVDIQLDCLGAVDWNQIGCDLLDRFSLPKSTVIKALIDLPCEKRSSEEVVRIVVVNAKKADPKAQALKTAKAVKSGGQVFKKKAKKIRTSVTFHRPKTLKKDRSPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01219 1009 MobiDBLite consensus disorder prediction 603 621 - -
Vimu6g01219 1009 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 926 1002 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vimu6g01219 1009 SMART VILL_6 306 403 IPR007122 GO:0051015
Vimu6g01219 1009 MobiDBLite consensus disorder prediction 19 78 - -
Vimu6g01219 1009 MobiDBLite consensus disorder prediction 603 622 - -
Vimu6g01219 1009 Pfam Ribosomal protein L23, N-terminal domain 869 919 IPR005633 -
Vimu6g01219 1009 ProSitePatterns Ribosomal protein L23 signature. 987 1002 IPR001014 GO:0019843
Vimu6g01219 1009 MobiDBLite consensus disorder prediction 19 33 - -
Vimu6g01219 1009 MobiDBLite consensus disorder prediction 94 122 - -
Vimu6g01219 1009 FunFam 60S ribosomal protein L23a 890 1009 - -
Vimu6g01219 1009 ProSiteProfiles Dual specificity protein phosphatase domain profile. 157 299 IPR020422 GO:0006470|GO:0008138
Vimu6g01219 1009 SUPERFAMILY Actin depolymerizing proteins 306 411 - -
Vimu6g01219 1009 Pfam Dual specificity phosphatase, catalytic domain 165 295 IPR000340 GO:0008138|GO:0016311
Vimu6g01219 1009 Hamap 50S ribosomal protein L23 [rplW]. 929 1009 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu6g01219 1009 SMART dsp_5 157 296 IPR020422 GO:0006470|GO:0008138
Vimu6g01219 1009 Gene3D - 890 1009 IPR012677 -
Vimu6g01219 1009 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 216 277 IPR000387 GO:0016311|GO:0016791
Vimu6g01219 1009 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 298 IPR029021 -
Vimu6g01219 1009 Pfam Ribosomal protein L23 929 990 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu6g01219 1009 PANTHER MKPA PROTEIN 12 849 - -
Vimu6g01219 1009 Gene3D Protein tyrosine phosphatase superfamily 133 299 IPR029021 -
Vimu6g01219 1009 MobiDBLite consensus disorder prediction 510 537 - -
Vimu6g01219 1009 ProSitePatterns Tyrosine specific protein phosphatases active site. 241 251 IPR016130 GO:0016311|GO:0016791
Vimu6g01219 1009 Gene3D Severin 320 404 IPR029006 -
Vimu6g01219 1009 CDD DSP 158 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01219 Vimu-Chr6 12308600 12315250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01219 2 193 Protein tyrosine phosphatase (PTP) family AT3G55270 62.500 1.76e-65 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01219 - - vum:124838930 1571.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01219 6 12308600 12315250 Vimu6g01219 6 12308600 12315250 ECH