Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01212 ATGGAGATAAGCTACGCATCGCCAAGTTTCTACGACCTCCCCGCCGCCGCCGCTGCTTCTACCATGCCGTCCTCCGCGACCGGAGCACGTCCTGTAAGGATTATTCCTCTTCAGCATCCGACCGCCACCTCGTCCTCGTCTCCGCCGGCGAACGTCGCCTTCGCGCGGTGGACCGCGAAGCTCAGGCGGATGACGTGGCTCGAGTGGCTCGAGTTCTTCTTCCCTTGCCTACGCTGGATTCGCATCTATAAATGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGTCGATGTCGTATGCAAAATTGGCTGGACTTGAACCGATATATGGACTCTACTCTGGTTTTGTGCCTATATTTGTGTATGCCATATTCGGGTCTTCCCGCCAGCTTGCAGTAGGCCCAGTGGCATTGGTTTCCCTCTTGGTATCTAACGTGCTAAGTGGCATAGCTGACCCGTCCAGTGAATTATACACAGAGCTTGCAATATTACTGTCCCTTATGGTGGGGATACTGGAGTGTATAATGGGACTATTGAGGCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATTTCTGGCTTTACAACTTCTTCCGCTATTGTCATTGGTTTATCTCAAGCTAAGTACTTCTTGGGGTATGATGTAGACGGAAGTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGACGGAGCAGATAAGTTTTCATGGCCACCTTTTGTGATGGGATCCATTATGCTTGCGATACTACTTGTCATGAAACACCTGGGAAAATCAAGGAAGTACTTGCGATTCTTGAGAGCTGCTGGTCCTCTTACAGCAGTAGTTCTGGGAACAATTTTTGCAAAAGTTTTTCATCCACCGTCAATTTCTTTGGTGGGAGATATACCTCAAGGCTTACCAAAATTTTCTGTTCCAAAAGCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTATTCTCATAACCGGTGTGGCTATACTGGAATCAGTGGGAATTGCCAAAGCATTAGCAGCGAAGAATGGGTATGAGTTGGATTCAAATCAAGAGTTGTTTGGTCTTGGAGTTTCCAATGTTCTTGGTTCATTCTTTTCAGCATACCCCACCACAGGATCCTTTTCAAGGTCAGCTGTAAATCATGAGAGTGGTGCAAAATCTGGGGTATCTGGGATTGTTTCAGGAATTATAATGATCTGTGCACTTATGTTTCTTACACCATTGTTTGAGTACATACCTCAGTGTACCCTTGCTGCTATTGTGATCTCTGCTGTGATAGGTCTGGTAGACTACGAGGAGGCCATTTTTTTGTGGCGTGTTGATAAGAAAGATTTTATTCTTTGGACCATTACTAGTACTACAACATTGTTCCTTGGTATTGAGATCGGTGTCCTTGTTGGGGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATCGCTGTTTTGGGTCGTTTGCCAGGGACAACTGTTTATAGGAATGTTAAACAGTATCCTGAAGCATATAAATATAATGGAATTGTAATTGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACGAGTTTCATAAAGGACAGGTTGCGTGAATATGAAGTTCATGTTGATAGTTCTAAAAGCCGTGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTTGAGATGGCACCTGTGACCTACATAGACTCTAGTGCTGTTCAAGCTTTGAAAGACTTATATCAGGAGTACAAATTACGGGACGTTCAGATTGCAATATCCAATCCAAACCCAGAAGTTCTGCTCACCCTTTCAAAATCCGGTCTGGTGGAGTTGATAGGTAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGCTTGCAACATGTTCAAAGCTTGAAAGCTGGATCTGACAGTTCACACACGCCACTTTCTTCATTAGAAGACAAACCGAGTTTGTTTGCTCGATTGTCGAAAGAGAGAGCGGAGAAGTTTCCAGTTATCGACTTAGAATCTGGTAATGGCAGGCCTCCACTTCCCAAGGACATAGATTCCCAGTTGGAGCCATTGTTGTCCAAAGAACGTTGA 2118 0.4448 MEISYASPSFYDLPAAAAASTMPSSATGARPVRIIPLQHPTATSSSSPPANVAFARWTAKLRRMTWLEWLEFFFPCLRWIRIYKWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLEPIYGLYSGFVPIFVYAIFGSSRQLAVGPVALVSLLVSNVLSGIADPSSELYTELAILLSLMVGILECIMGLLRLGWLIRFISHSVISGFTTSSAIVIGLSQAKYFLGYDVDGSSKIIPVVKSIIDGADKFSWPPFVMGSIMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTIFAKVFHPPSISLVGDIPQGLPKFSVPKAFEYAQSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVSGIIMICALMFLTPLFEYIPQCTLAAIVISAVIGLVDYEEAIFLWRVDKKDFILWTITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYKYNGIVIVRVDAPIYFANTSFIKDRLREYEVHVDSSKSRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKLRDVQIAISNPNPEVLLTLSKSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKAGSDSSHTPLSSLEDKPSLFARLSKERAEKFPVIDLESGNGRPPLPKDIDSQLEPLLSKER 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01212 705 MobiDBLite consensus disorder prediction 678 705 - -
Vimu6g01212 705 NCBIfam sulfate permease 75 632 IPR001902 GO:0016020|GO:0055085
Vimu6g01212 705 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271|GO:0008272
Vimu6g01212 705 FunFam Sulfate transporter 31 492 639 - -
Vimu6g01212 705 CDD STAS_SulP_like_sulfate_transporter 513 629 - -
Vimu6g01212 705 Gene3D STAS domain 492 640 IPR036513 -
Vimu6g01212 705 ProSiteProfiles STAS domain profile. 512 636 IPR002645 -
Vimu6g01212 705 PANTHER SULFATE TRANSPORTER 54 642 IPR001902 GO:0016020|GO:0055085
Vimu6g01212 705 Pfam Sulfate permease family 89 462 IPR011547 GO:0016020
Vimu6g01212 705 Pfam STAS domain 513 632 IPR002645 -
Vimu6g01212 705 SUPERFAMILY SpoIIaa-like 514 636 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01212 Vimu-Chr6 12242980 12250856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01212 3 666 Inorganic Solute Cotransporters AT5G13550 72.404 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01212 K18059 - gmx:100794754 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01212 6 12242980 12250856 Vimu6g01212 6 12242980 12250856 ECH