Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01210 ATGGCTTCTTCACTCCCCCGGAGAAGGAGAAGAACTCACGCTCCCAAATCATCTTCCACCGTAATCGACGACATTTTCTGCCAGGAATGCGGCTCCGGCCACTCTCCGGCGAAGTTGCTTCTCTGCGACAAATGCGATCGAGGTTACCACCTCTTCTGCCTCCGCCCCATCCTCCCTTCCGTCCCCAAAGGATCCTGGTTCTGTGGCTCCTGCTCCAACCACAAGCCTAAATACGCCGAAGAAGCGAAAGCGAGGTGGGAGCTTGGTGATGTTGAAGAAGAAAAGGAAACTGTTGCCCTTCGTGCCGAGTGA 312 0.5513 MASSLPRRRRRTHAPKSSSTVIDDIFCQECGSGHSPAKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCGSCSNHKPKYAEEAKARWELGDVEEEKETVALRAE 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01210 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 97 IPR013083 -
Vimu6g01210 103 SMART PHD_3 26 72 IPR001965 -
Vimu6g01210 103 CDD PHD_RSF1 27 71 - -
Vimu6g01210 103 ProSiteProfiles Zinc finger PHD-type profile. 24 74 IPR019787 -
Vimu6g01210 103 SUPERFAMILY FYVE/PHD zinc finger 17 78 IPR011011 -
Vimu6g01210 103 Pfam PHD-finger 26 73 IPR019787 -
Vimu6g01210 103 PANTHER OS02G0192300 PROTEIN 23 95 - -
Vimu6g01210 103 ProSitePatterns Zinc finger PHD-type signature. 27 71 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01210 Vimu-Chr6 12239674 12240307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01210 24 89 C2H2 Transcription Factor Family AT3G01460 30.303 5.90e-07 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu6g01210 PHD 9.7e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01210 K24406 - gmx:100775247 145.206